RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA900999" and tax_phylum = "Evosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Evosea · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA900999 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3428860 3428860 PRJNA900999_S_NODE_463_length_439_cov_9.624390_g410_i0 PRJNA900999 463 439 9.62439 42.2510721 Coremiostelium polycephalum 142831 Evosea other_Eukaryota 93.5 2.5e-14   NTclustered gi|85062629|gb|DQ340387.1| 142831 g410 i0 88.312 18.5125284738041 77 9 18 0 291 367 12448 12524 Dictyostelium polycephalum 17S ribosomal RNA, 5.8S ribosomal RNA, and 26S ribosomal RNA genes, complete sequence blastn 8127 93.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales   Coremiostelium Coremiostelium polycephalum
9806037 9806037 PRJNA900999_S_NODE_728_length_376_cov_40.559078_g672_i0 PRJNA900999 728 376 40.559078 152.50213328 Cavenderia fasciculata 261658 Evosea other_Eukaryota 211 5.58e-50   NTclustered gi|470240569|ref|XM_004354224.1| 261658 g672 i0 85.93 100.417553191489 199 27 53 1 1 199 33 230 Cavenderia fasciculata ubiquitin (ubqJ), partial mRNA blastn 37757 211 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
27372223 27372223 PRJNA900999_S_NODE_3283_length_230_cov_2.666667_g3227_i0 PRJNA900999 3283 230 2.666667 6.1333341 Cavenderia fasciculata 261658 Evosea other_Eukaryota 59.3 4.35e-8   NR XP_004356364.1 261658 g3227 i0 57.8 0.58695652173913 45 19 58.7 0 169 35 348 392 XP_004356364.1 leucine-rich repeat-containing protein [Cavenderia fasciculata] diamond 135 59.3 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
28477008 28477008 PRJNA900999_S_NODE_4666_length_201_cov_3.313953_g4610_i0 PRJNA900999 4666 201 3.313953 6.66104553 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 43.5 0.0109   NR PRP80728.1 1890364 g4610 i0 66.7 0.402985074626866 27 9 40.3 0 5 85 266 292 PRP80728.1 ras-related protein Rab-2A [Planoprotostelium fungivorum] diamond 81 43.5 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
30845760 30845760 PRJNA900999_S_NODE_8634_length_158_cov_2.550388_g8578_i0 PRJNA900999 8634 158 2.550388 4.02961304 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 55.5 1.17e-7   NR PRP76760.1 1890364 g8578 i0 59.5 0.70253164556962 37 13 66.5 1 33 137 130 166 PRP76760.1 hypothetical protein PROFUN_14885 [Planoprotostelium fungivorum] diamond 111 55.5 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
32742682 32742682 PRJNA900999_S_NODE_2080_length_271_cov_3.342975_g2024_i0 PRJNA900999 2080 271 3.342975 9.05946225 Dictyostelium discoideum AX4 352472 Evosea other_Eukaryota 44.3 0.0107   NR XP_642519.1 352472 g2024 i0 28.6 0.85239852398524 77 53 85.2 1 4 234 126 200 XP_642519.1 hypothetical protein DDB_G0277703 [Dictyostelium discoideum AX4] diamond 231 44.3 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;