RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA900999" and tax_phylum = "Chloroflexota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA900999 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12357033 12357033 PRJNA900999_S_NODE_3130_length_234_cov_3.809756_g3074_i0 PRJNA900999 3130 234 3.809756 8.91482904 Phototrophicus methaneseepsis 2710758 Bacteria Bacteria 276 1.1399999999999999e-69   NTclustered gi|1932369605|gb|CP062983.1| 2710758 g3074 i0 88.889 2.25213675213675 225 23 96 2 1 224 2827112 2827335 Phototrophicus methaneseepsis strain ZRK33 chromosome, complete genome blastn 527 276 1 Bacteria   Bacillati Chloroflexota Candidatus Thermofontia Phototrophicales Phototrophicaceae Phototrophicus Phototrophicus methaneseepsis
28508617 28508617 PRJNA900999_S_NODE_9887_length_150_cov_2.694215_g9831_i0 PRJNA900999 9887 150 2.694215 4.0413225 Longilinea arvoryzae 360412 Bacteria Bacteria 67 2.9099999999999998e-11   NR WP_075073907.1 360412 g9831 i0 72.9 5.34 48 13 96 0 147 4 26 73 WP_075073907.1 dynamin family protein [Longilinea arvoryzae] diamond 801 67 1 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales Anaerolineaceae Longilinea Longilinea arvoryzae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;