RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA900999" and tax_phylum = "Cercozoa"

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tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA900999 · 5 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
878088 878088 PRJNA900999_S_NODE_2001_length_274_cov_15.375510_g1945_i0 PRJNA900999 2001 274 15.37551 42.1288974 uncultured Cercozoa 175275 SAR_Eukaryotes SAR_Eukaryotes 418 2.15e-112   NTclustered gi|1270185585|gb|MG266086.1| 175275 g1945 i0 94.161 99.6496350364963 274 16 100 0 1 274 622 349 Uncultured Cercozoa clone MossITSLSU68 large subunit ribosomal RNA gene, partial sequence blastn 27304 418 1 Eukaryota Sar   Cercozoa         uncultured Cercozoa
21280036 21280036 PRJNA900999_S_NODE_5917_length_184_cov_1.909677_g5861_i0 PRJNA900999 5917 184 1.909677 3.51380568 Rosculus hawesi 2231161 SAR_Eukaryotes SAR_Eukaryotes 340 2.99e-89   NTclustered gi|1402550478|gb|MH488764.1| 2231161 g5861 i0 100 25.304347826087 184 0 100 0 1 184 1650 1833 Rosculus hawesi isolate MSUPP161R small subunit ribosomal RNA gene, partial sequence blastn 4656 340 1 Eukaryota Sar   Cercozoa     Guttulinopsidae Rosculus Rosculus hawesi
21648157 21648157 PRJNA900999_S_NODE_3517_length_224_cov_9.625641_g3461_i0 PRJNA900999 3517 224 9.625641 21.56143584 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 87.9 5.46e-13   NTclustered gi|220983369|dbj|AB453005.1| 29199 g3461 i0 76.163 16.8392857142857 172 37 77 3 1 172 2926 3093 Chlorarachnion reptans gene for nuclear large subunit ribosomal RNA, partial sequence blastn 3772 87.9 1 Eukaryota Sar   Cercozoa Chlorarachniophyceae     Chlorarachnion Chlorarachnion reptans
23830232 23830232 PRJNA900999_S_NODE_6139_length_181_cov_3.177632_g6083_i0 PRJNA900999 6139 181 3.177632 5.75151392 Rosculus hawesi 2231161 SAR_Eukaryotes SAR_Eukaryotes 291 2.9899999999999993e-74   NTclustered gi|1402550477|gb|MH488763.1| 2231161 g6083 i0 95.628 6.02762430939227 183 4 100 2 1 181 979 799 Rosculus hawesi isolate C1C small subunit ribosomal RNA gene, partial sequence blastn 1091 291 1 Eukaryota Sar   Cercozoa     Guttulinopsidae Rosculus Rosculus hawesi
25104075 25104075 PRJNA900999_S_NODE_1660_length_291_cov_9.187023_g1604_i0 PRJNA900999 1660 291 9.187023 26.73423693 Esquamula lacrimiformis 1176540 SAR_Eukaryotes SAR_Eukaryotes 255 1.91e-63   NTclustered gi|409971369|dbj|AB714271.1| 1176540 g1604 i0 86.25 70.0927835051546 240 27 81 6 56 291 3901 3664 Esquamula lacrimiformis gene for 28S ribosomal RNA, partial sequence blastn 20397 255 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida   Esquamula Esquamula lacrimiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;