RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA900999", tax_kingdom = "Pseudomonadati" and tax_phylum = "Nitrospirota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nitrospirota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA900999 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1246020 1246020 PRJNA900999_S_NODE_8641_length_158_cov_2.325581_g8585_i0 PRJNA900999 8641 158 2.325581 3.67441798 Nitrospira 1234 Bacteria Bacteria 215 1.57e-51   NTclustered gi|2863129529|dbj|AP038806.1| 70125 g8585 i0 91.139 19.5126582278481 158 14 100 0 1 158 3063190 3063033 MAG: Nitrospira sp. NFB02 DNA, complete genome blastn 3083 215 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
27095024 27095024 PRJNA900999_S_NODE_3622_length_222_cov_2.927461_g3566_i0 PRJNA900999 3622 222 2.927461 6.49896342 Nitrospira 1234 Bacteria Bacteria 134 6.429999999999998e-35   NR WP_053379518.1 42253 g3566 i0 95.7 7.45945945945946 69 3 93.2 0 2 208 18 86 WP_053379518.1 flagellar basal-body MS-ring/collar protein FliF [Nitrospira moscoviensis] diamond 1656 134 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira moscoviensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;