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contig_metadata

7 rows where bioproject = "PRJNA900999", tax_clade = "Sar" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA900999 · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11449724 11449724 PRJNA900999_S_NODE_1209_length_322_cov_3.962457_g1153_i0 PRJNA900999 1209 322 3.962457 12.75911154 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 438 1.99e-118   NTclustered gi|2248513400|ref|NC_063804.1| 4784 g1153 i0 99.583 76.027950310559 240 1 75 0 83 322 2390 2151 Phytophthora capsici isolate TaiwanPc33e mitochondrion, complete genome blastn 24481 440 0.995454545454545 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora capsici
14906081 14906081 PRJNA900999_S_NODE_7052_length_171_cov_3.352113_g6996_i0 PRJNA900999 7052 171 3.352113 5.73211323 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 230 6.1599999999999985e-56   NTclustered gi|1111669722|ref|NC_032051.1| 112090 g6996 i0 97.059 83.280701754386 136 4 80 0 1 136 2256 2391 Aphanomyces astaci isolate AP03 mitochondrion, complete genome blastn 14241 230 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
16180793 16180793 PRJNA900999_S_NODE_1933_length_277_cov_209.653226_g1877_i0 PRJNA900999 1933 277 209.653226 580.73943602 Aphanomyces stellatus 120398 SAR_Eukaryotes SAR_Eukaryotes 444 3.599999999999999e-120   NTclustered gi|363498776|gb|JN662487.1| 120398 g1877 i0 97.318 94.3104693140794 261 7 94 0 5 265 63 323 Aphanomyces stellatus strain GF 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 26124 444 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces stellatus
18729549 18729549 PRJNA900999_S_NODE_9535_length_152_cov_2.170732_g9479_i0 PRJNA900999 9535 152 2.170732 3.29951264 Phytophthora quercina 78236 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.001   NTclustered gi|2248513480|ref|NC_063806.1| 78236 g9479 i0 86.792 0.348684210526316 53 4 34 3 1 51 415 364 Phytophthora quercina isolate ST_201908082014 mitochondrion, complete genome blastn 53 56.5 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora quercina
22554916 22554916 PRJNA900999_S_NODE_2518_length_253_cov_10.325893_g2462_i0 PRJNA900999 2518 253 10.325893 26.12450929 Thraustotheca clavata 74557 SAR_Eukaryotes SAR_Eukaryotes 433 7.02e-117   NTclustered gi|533310373|ref|NC_022179.1| 74557 g2462 i0 99.578 102.758893280632 237 1 94 0 1 237 10473 10237 Thraustotheca clavata mitochondrion, complete genome blastn 25998 433 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Thraustotheca Thraustotheca clavata
27435305 27435305 PRJNA900999_S_NODE_4683_length_201_cov_2.226744_g4627_i0 PRJNA900999 4683 201 2.226744 4.47575544 Phytophthora megakarya 4795 SAR_Eukaryotes SAR_Eukaryotes 63.5 1.01e-9   NR OWZ17258.1 4795 g4627 i0 62 3.73134328358209 50 19 74.6 0 201 52 217 266 OWZ17258.1 DEAD/DEAH box RNA helicase [Phytophthora megakarya] diamond 750 63.5 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora megakarya
30403816 30403816 PRJNA900999_S_NODE_1393_length_307_cov_3.946043_g1337_i0 PRJNA900999 1393 307 3.946043 12.11435201 Albugo candida 65357 SAR_Eukaryotes SAR_Eukaryotes 51.6 2.77e-5   NR CCI45370.1 65357 g1337 i0 49 0.498371335504886 51 26 49.8 0 206 54 27 77 CCI45370.1 unnamed protein product [Albugo candida] diamond 153 51.6 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo candida

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;