RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA900999", tax_clade = "Sar" and tax_phylum = "Endomyxa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA900999 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13631841 13631841 PRJNA900999_S_NODE_4831_length_198_cov_7.804734_g4775_i0 PRJNA900999 4831 198 7.804734 15.45337332 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 84.2 6.09e-12   NTclustered gi|1511360564|emb|LS992577.1| 37360 g4775 i0 86.076 0.787878787878788 79 9 39 2 4 81 5817 5894 Plasmodiophora brassicae genome assembly, organelle: mitochondrion blastn 156 84.2 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
32371506 32371506 PRJNA900999_S_NODE_4619_length_202_cov_2.543353_g4563_i0 PRJNA900999 4619 202 2.543353 5.13757306 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 92 1.76e-20   NR SPQ93275.1 37360 g4563 i0 75.4 12.6831683168317 61 15 90.6 0 2 184 236 296 SPQ93275.1 unnamed protein product [Plasmodiophora brassicae] diamond 2562 92.8 0.991379310344828 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;