RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA900999", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA900999 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17456323 17456323 PRJNA900999_S_NODE_3234_length_231_cov_6.440594_g3178_i0 PRJNA900999 3234 231 6.440594 14.87777214 Parachlamydiales bacterium 2052178 Bacteria Bacteria 198 2.51e-46   NTclustered gi|2874253843|emb|OY969899.1| 2052178 g3178 i0 83.871 55.9523809523809 217 26 90 7 1 209 2632015 2631800 MAG: Parachlamydiales bacterium isolate MFD00082.bin.c.1 genome assembly, chromosome: 1 blastn 12925 198 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales     Parachlamydiales bacterium
25104151 25104151 PRJNA900999_S_NODE_8040_length_162_cov_3.857143_g7984_i0 PRJNA900999 8040 162 3.857143 6.24857166 uncultured Chlamydiae bacterium 305355 Bacteria Bacteria 145 2.16e-30   NTclustered gi|2874253676|emb|OY969110.1| 305355 g7984 i0 86.667 2.74074074074074 135 13 82 5 12 144 1641568 1641437 MAG: uncultured Chlamydiae bacterium isolate MFD00082.bin.c.5 genome assembly, chromosome: 1 blastn 444 145 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia       uncultured Chlamydiae bacterium
30372182 30372182 PRJNA900999_S_NODE_9352_length_153_cov_2.419355_g9296_i0 PRJNA900999 9352 153 2.419355 3.70161315 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 41.6 0.0276   NR MEI8366552.1 2052176 g9296 i0 38.6 0.862745098039216 44 24 80.4 1 20 142 172 215 MEI8366552.1 hypothetical protein [Parachlamydiaceae bacterium] diamond 132 41.6 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;