RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA900999", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJNA900999 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12357014 12357014 PRJNA900999_S_NODE_1950_length_277_cov_2.931452_g1894_i0 PRJNA900999 1950 277 2.931452 8.12012204 Filenchus sp. 3 TJP-2012 1166537 Nematoda Nematoda 67.6 9.1e-7   NTclustered gi|384482669|gb|JQ005013.1| 1166537 g1894 i0 91.667 0.588447653429603 48 4 17 0 1 48 689 736 Filenchus sp. 3 TJP-2012 isolate 32T16I09 large subunit ribosomal RNA gene, partial sequence blastn 163 67.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Tylenchidae Filenchus Filenchus sp. 3 TJP-2012
17823508 17823508 PRJNA900999_S_NODE_5694_length_186_cov_4.668790_g5638_i0 PRJNA900999 5694 186 4.66879 8.6839494 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 344 2.34e-90   NTclustered gi|2646098909|gb|PP099678.1| 49354 g5638 i0 100 99.6989247311828 186 0 100 0 1 186 863 678 Plectus sp. isolate Nem.501 small subunit ribosomal RNA gene, partial sequence blastn 18544 344 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Plectida Plectidae Plectus Plectus sp.
28894953 28894953 PRJNA900999_S_NODE_3288_length_230_cov_2.104478_g3232_i0 PRJNA900999 3288 230 2.104478 4.8402994 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 43.9 0.0119   NR MCP9262159.1 6287 g3232 i0 76.9 1.38260869565217 26 6 33.9 0 152 75 80 105 MCP9262159.1 hypothetical protein [Dirofilaria immitis] diamond 318 43.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Dirofilaria Dirofilaria immitis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;