RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA900999", tax_clade = "Opisthokonta" and tax_phylum = "Mucoromycota"

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tax_superkingdom 1

tax_phylum 1

  • Mucoromycota · 4 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 4 ✖

bioproject 1

  • PRJNA900999 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3428824 3428824 PRJNA900999_S_NODE_1463_length_302_cov_11.728938_g1407_i0 PRJNA900999 1463 302 11.728938 35.42139276 Rhizopus stolonifer 4846 Fungi Fungi 398 3.1399999999999993e-106   NTclustered gi|2199610414|gb|OM837198.1| 4846 g1407 i0 90.759 100.056291390728 303 21 99 5 5 302 4 304 Rhizopus stolonifer strain KKP 486 large subunit ribosomal RNA gene, partial sequence blastn 30217 398 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Rhizopodaceae Rhizopus Rhizopus stolonifer
11081700 11081700 PRJNA900999_S_NODE_5689_length_186_cov_4.936306_g5633_i0 PRJNA900999 5689 186 4.936306 9.18152916 Corymbiglomus corymbiforme 651966 Fungi Fungi 58.4 3.42e-4   NTclustered gi|2863800436|gb|PQ669893.1| 651966 g5633 i0 100 5.17741935483871 31 0 17 0 1 31 762 792 Corymbiglomus corymbiforme isolate HbAMF183 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 963 58.4 1 Eukaryota Opisthokonta Fungi Mucoromycota Glomeromycetes Diversisporales Diversisporaceae Corymbiglomus Corymbiglomus corymbiforme
12357073 12357073 PRJNA900999_S_NODE_6770_length_174_cov_3.331034_g6714_i0 PRJNA900999 6770 174 3.331034 5.79599916 Mycotypha africana 64632 Fungi Fungi 60.2 8.75e-5   NTclustered gi|2432572365|ref|XM_053078039.1| 64632 g6714 i0 94.737 0.402298850574713 38 2 22 0 11 48 310 347 Mycotypha africana short-chain dehydrogenase (BDF20DRAFT_826122), partial mRNA blastn 70 60.2 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Mycotyphaceae Mycotypha Mycotypha africana
24197509 24197509 PRJNA900999_S_NODE_2999_length_237_cov_23.677885_g2943_i0 PRJNA900999 2999 237 23.677885 56.11658745 Fungi 4751 Fungi Fungi 394 3.069999999999999e-105   NTclustered gi|658131632|emb|HF968958.1| 4874 g2943 i0 97.021 115.649789029536 235 6 99 1 1 234 2271 2037 Gigaspora margarita partial 28S rRNA gene, strain BEG34, isolate spore 4, clone BL2_6_26 blastn 27409 394 1 Eukaryota Opisthokonta Fungi Mucoromycota Glomeromycetes Diversisporales Gigasporaceae Gigaspora Gigaspora margarita

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;