RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA900999" and tax_clade = "Discoba"

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tax_phylum 2

analysis 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 6 ✖

bioproject 1

  • PRJNA900999 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11081703 11081703 PRJNA900999_S_NODE_5889_length_184_cov_3.800000_g5833_i0 PRJNA900999 5889 184 3.8 6.992 Stachyamoeba lipophora 463046 Heterolobosea other_Eukaryota 132 1.96e-26   NTclustered gi|756877602|ref|NC_026312.1| 463046 g5833 i0 81.707 89.2391304347826 164 25 89 5 1 163 1062 903 Stachyamoeba lipophora strain ATCC 50324 culture-collection ATCC:50324 mitochondrion, complete genome blastn 16420 132 1 Eukaryota Discoba   Heterolobosea     Gruberellidae Stachyamoeba Stachyamoeba lipophora
21280013 21280013 PRJNA900999_S_NODE_3477_length_225_cov_5.484694_g3421_i0 PRJNA900999 3477 225 5.484694 12.3405615 root 1 Root_unresolved Root_unresolved 62.4 3.36e-9   NR CAF05589.1 3039 g3421 i0 92.9 2.2 28 2 37.3 0 223 140 447 474 CAF05589.1 dihydrolipoyl dehydrogenase [Euglena gracilis] diamond 495 62.8 0.993630573248408 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Euglena Euglena gracilis
22554898 22554898 PRJNA900999_S_NODE_1078_length_334_cov_6.209836_g1022_i0 PRJNA900999 1078 334 6.209836 20.74085224 Peranema trichophorum 56466 Euglenozoa other_Eukaryota 555 1.97e-153   NTclustered gi|27461806|gb|AY130826.1| 56466 g1022 i0 98.413 1.81736526946108 315 5 94 0 20 334 370 56 Peranema trichophorum voucher Carolina Biol. Supp. Co. (CBS) CE 13-1838 large subunit ribosomal RNA gene, partial sequence blastn 607 555 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemidae Peranema Peranema trichophorum
25104143 25104143 PRJNA900999_S_NODE_7080_length_171_cov_2.464789_g7024_i0 PRJNA900999 7080 171 2.464789 4.21478919 Parabodo caudatus 351713 Euglenozoa other_Eukaryota 291 2.79e-74   NTclustered gi|304226|gb|L19405.1|BODRR24S 351713 g7024 i0 97.661 160.678362573099 171 1 100 2 1 171 871 704 Bodo caudatus 24S ribosomal RNA alpha subunit blastn 27476 291 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Parabodonida   Parabodo Parabodo caudatus
26968450 26968450 PRJNA900999_S_NODE_9522_length_152_cov_2.439024_g9466_i0 PRJNA900999 9522 152 2.439024 3.70731648 Kinetoplastea 5653 Euglenozoa other_Eukaryota 70.1 2.4e-12   NR CUE68699.1 75058 g9466 i0 64.6 2.84210526315789 48 17 94.7 0 152 9 89 136 CUE68699.1 heat shock protein 70, putative [Bodo saltans] diamond 432 70.1 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae Bodo Bodo saltans
31825678 31825678 PRJNA900999_S_NODE_6517_length_176_cov_558.959184_g6461_i0 PRJNA900999 6517 176 558.959184 983.76816384 Acrasis kona 1008807 Heterolobosea other_Eukaryota 57.4 9.59e-8   NR KAL0485709.1 1008807 g6461 i0 61.4 2.25 44 16 73.3 1 130 2 54 97 KAL0485709.1 kinesin-like calmodulin-binding protein [Acrasis kona] diamond 396 57.4 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;