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contig_metadata

20 rows where bioproject = "PRJNA900999" and tax_clade = "Amoebozoa"

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tax_phylum 3

analysis 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 20 ✖

bioproject 1

  • PRJNA900999 · 20 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2153426 2153426 PRJNA900999_S_NODE_602_length_400_cov_22.614555_g547_i0 PRJNA900999 602 400 22.614555 90.45822 uncultured Vannellidae 544561 Discosea other_Eukaryota 207 7.73e-49   NTclustered gi|724028230|gb|KP099889.1| 544561 g547 i0 77.573 32.37 379 61 94 21 27 400 482 841 Uncultured Vannellidae clone b18 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 12948 207 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae   uncultured Vannellidae
2153432 2153432 PRJNA900999_S_NODE_6562_length_176_cov_3.727891_g6506_i0 PRJNA900999 6562 176 3.727891 6.56108816 Pellita digitata 1485084 Discosea other_Eukaryota 119 1.44e-22   NTclustered gi|608606230|gb|KF705037.1| 1485084 g6506 i0 80.702 17.6420454545455 171 18 90 8 1 158 1165 997 Pellita digitata clone 2 18S ribosomal RNA gene, partial sequence blastn 3105 119 1 Eukaryota Amoebozoa   Discosea Flabellinia   Pellitidae Pellita Pellita digitata
2521632 2521632 PRJNA900999_S_NODE_8722_length_157_cov_3.429688_g8666_i0 PRJNA900999 8722 157 3.429688 5.38461016 Acanthamoeba 5754 Discosea other_Eukaryota 285 1.17e-72   NTclustered gi|28194575|gb|AF479519.1| 5756 g8666 i0 99.363 96.8662420382166 157 1 100 0 1 157 1325 1169 Acanthamoeba sp. strain VEPV 94-3 16S small subunit ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product blastn 15208 285 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba sp.
3428860 3428860 PRJNA900999_S_NODE_463_length_439_cov_9.624390_g410_i0 PRJNA900999 463 439 9.62439 42.2510721 Coremiostelium polycephalum 142831 Evosea other_Eukaryota 93.5 2.5e-14   NTclustered gi|85062629|gb|DQ340387.1| 142831 g410 i0 88.312 18.5125284738041 77 9 18 0 291 367 12448 12524 Dictyostelium polycephalum 17S ribosomal RNA, 5.8S ribosomal RNA, and 26S ribosomal RNA genes, complete sequence blastn 8127 93.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales   Coremiostelium Coremiostelium polycephalum
5074151 5074151 PRJNA900999_S_NODE_6124_length_181_cov_4.368421_g6068_i0 PRJNA900999 6124 181 4.368421 7.90684201 Acanthamoeba 5754 Discosea other_Eukaryota 259 8.44e-65   NTclustered gi|1718348688|gb|MK390851.1| 5756 g6068 i0 92.818 99.9944751381215 181 10 99 3 1 179 67 246 Acanthamoeba sp. isolate FS-16-Q2-C 18S ribosomal RNA gene, partial sequence blastn 18099 259 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba sp.
7256206 7256206 PRJNA900999_S_NODE_5006_length_195_cov_11.704819_g4950_i0 PRJNA900999 5006 195 11.704819 22.82439705 Luapeleamoeba arachisporum 668371 Discosea other_Eukaryota 56.5 0.001   NTclustered gi|260909299|gb|FJ766485.1| 668371 g4950 i0 90.698 0.220512820512821 43 3 22 1 1 42 968 926 Protostelium arachisporum strain HI05-3a 18S ribosomal RNA gene, partial sequence blastn 43 56.5 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Luapeleamoeba Luapeleamoeba arachisporum
7256222 7256222 PRJNA900999_S_NODE_7306_length_169_cov_1.657143_g7250_i0 PRJNA900999 7306 169 1.657143 2.80057167 Cochliopodium kieliense 1512276 Discosea other_Eukaryota 211 2.2e-50   NTclustered gi|659103927|gb|KJ569727.1| 1512276 g7250 i0 95.522 5.72781065088757 134 3 78 3 1 132 136 4 Cochliopodium kieliense clone 9611 18S ribosomal RNA gene, partial sequence blastn 968 211 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium kieliense
9806037 9806037 PRJNA900999_S_NODE_728_length_376_cov_40.559078_g672_i0 PRJNA900999 728 376 40.559078 152.50213328 Cavenderia fasciculata 261658 Evosea other_Eukaryota 211 5.58e-50   NTclustered gi|470240569|ref|XM_004354224.1| 261658 g672 i0 85.93 100.417553191489 199 27 53 1 1 199 33 230 Cavenderia fasciculata ubiquitin (ubqJ), partial mRNA blastn 37757 211 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
11081667 11081667 PRJNA900999_S_NODE_2649_length_249_cov_3.540909_g2593_i0 PRJNA900999 2649 249 3.540909 8.81686341 Tubulinea group 04 sp. CAL5 1215995 Tubulinea other_Eukaryota 420 5.36e-113   NTclustered gi|399764275|gb|JQ271786.1| 1215995 g2593 i0 100 13.0963855421687 227 0 91 0 23 249 223 449 Tubulinea group 04 sp. CAL5 18S ribosomal RNA gene, partial sequence blastn 3261 420 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea group 04 sp. CAL5
11449744 11449744 PRJNA900999_S_NODE_7109_length_170_cov_9.460993_g7053_i0 PRJNA900999 7109 170 9.460993 16.0836881 Vannellidae 95227 Discosea other_Eukaryota 119 1.3800000000000001e-22   NTclustered gi|62865947|gb|AY929922.1| 325065 g7053 i0 100 37.6470588235294 64 0 38 0 1 64 559 622 Platyamoeba sp. strain CAZ7/I 18S small subunit ribosomal RNA gene, partial sequence blastn 6400 119 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Platyamoeba Platyamoeba sp. strain CAZ7/I
12357068 12357068 PRJNA900999_S_NODE_6190_length_180_cov_6.589404_g6134_i0 PRJNA900999 6190 180 6.589404 11.8609272 Acanthamoeba polyphaga 5757 Discosea other_Eukaryota 283 4.97e-72   NTclustered gi|932090235|gb|KP054475.2| 5757 g6134 i0 95.055 34.8111111111111 182 6 100 3 1 180 499 319 Acanthamoeba polyphaga strain Linc Ap-1 mitochondrion, complete genome blastn 6266 283 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba polyphaga
15273956 15273956 PRJNA900999_S_NODE_1332_length_311_cov_3.730496_g1276_i0 PRJNA900999 1332 311 3.730496 11.60184256 Acanthamoeba 5754 Discosea other_Eukaryota 399 9.009999999999998e-107   NTclustered gi|909719694|gb|KT185628.1| 5755 g1276 i0 95.6 76.2668810289389 250 9 80 2 1 249 2255 2503 Acanthamoeba castellanii isolate BCP-EM3VF21-1 mitochondrion, complete genome blastn 23719 399 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
16180781 16180781 PRJNA900999_S_NODE_1013_length_340_cov_17.926045_g957_i0 PRJNA900999 1013 340 17.926045 60.948553 Ripella platypodia 2047821 Discosea other_Eukaryota 558 1.55e-154   NTclustered gi|1269228354|gb|MF683479.1| 2047821 g957 i0 96.481 97.3176470588235 341 7 99 5 2 340 206 543 Ripella platypodia clone 23.4.28 18S ribosomal RNA gene, partial sequence blastn 33088 558 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella platypodia
20372353 20372353 PRJNA900999_S_NODE_4876_length_197_cov_511.708333_g4820_i0 PRJNA900999 4876 197 511.708333 1008.06541601 Ripella 1217112 Discosea other_Eukaryota 213 7.39e-51   NTclustered gi|399764202|gb|JQ271713.1| 1217113 g4820 i0 99.16 64.9390862944162 119 0 60 1 43 161 89 206 Ripella sp. 805 18S ribosomal RNA gene, partial sequence blastn 12793 215 0.990697674418605 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. 805
25472684 25472684 PRJNA900999_S_NODE_4600_length_202_cov_4.167630_g4544_i0 PRJNA900999 4600 202 4.16763 8.4186126 root 1 Root_unresolved Root_unresolved 374 3.3e-99   NTclustered gi|909719646|gb|KT185626.1| 5755 g4544 i0 100 32.5792079207921 202 0 100 0 1 202 3691 3892 Acanthamoeba castellanii 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 6581 374 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27372223 27372223 PRJNA900999_S_NODE_3283_length_230_cov_2.666667_g3227_i0 PRJNA900999 3283 230 2.666667 6.1333341 Cavenderia fasciculata 261658 Evosea other_Eukaryota 59.3 4.35e-8   NR XP_004356364.1 261658 g3227 i0 57.8 0.58695652173913 45 19 58.7 0 169 35 348 392 XP_004356364.1 leucine-rich repeat-containing protein [Cavenderia fasciculata] diamond 135 59.3 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
28477008 28477008 PRJNA900999_S_NODE_4666_length_201_cov_3.313953_g4610_i0 PRJNA900999 4666 201 3.313953 6.66104553 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 43.5 0.0109   NR PRP80728.1 1890364 g4610 i0 66.7 0.402985074626866 27 9 40.3 0 5 85 266 292 PRP80728.1 ras-related protein Rab-2A [Planoprotostelium fungivorum] diamond 81 43.5 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
30845754 30845754 PRJNA900999_S_NODE_2674_length_248_cov_3.283105_g2618_i0 PRJNA900999 2674 248 3.283105 8.1421004 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 67 1.11e-10   NR XP_004340627.1 1257118 g2618 i0 49.2 0.786290322580645 65 31 76.2 1 56 244 29 93 XP_004340627.1 pigment precursor permease subfamily protein [Acanthamoeba castellanii str. Neff] diamond 195 67 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30845760 30845760 PRJNA900999_S_NODE_8634_length_158_cov_2.550388_g8578_i0 PRJNA900999 8634 158 2.550388 4.02961304 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 55.5 1.17e-7   NR PRP76760.1 1890364 g8578 i0 59.5 0.70253164556962 37 13 66.5 1 33 137 130 166 PRP76760.1 hypothetical protein PROFUN_14885 [Planoprotostelium fungivorum] diamond 111 55.5 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
32742682 32742682 PRJNA900999_S_NODE_2080_length_271_cov_3.342975_g2024_i0 PRJNA900999 2080 271 3.342975 9.05946225 Dictyostelium discoideum AX4 352472 Evosea other_Eukaryota 44.3 0.0107   NR XP_642519.1 352472 g2024 i0 28.6 0.85239852398524 77 53 85.2 1 4 234 126 200 XP_642519.1 hypothetical protein DDB_G0277703 [Dictyostelium discoideum AX4] diamond 231 44.3 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;