RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA900028" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA900028 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7252572 7252572 PRJNA900028_P_NODE_120566_length_167_cov_0.864407_g119817_i0 PRJNA900028 120566 167 0.864407 1.44355969 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 309 7.53e-80   NTclustered gi|292559443|ref|NC_013986.1| 5778 g119817 i0 100 1 167 0 100 0 1 167 13376 13542 Hartmannella vermiformis mitochondrion, complete genome blastn 167 309 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
7623010 7623010 PRJNA900028_P_NODE_186606_length_161_cov_2.250000_g185857_i0 PRJNA900028 186606 161 2.25 3.6225 Vermamoeba 1260114 Tubulinea other_Eukaryota 298 1.56e-76   NTclustered gi|300078496|gb|GU001158.1| 5778 g185857 i0 100 80.472049689441 161 0 100 0 1 161 2341 2501 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 12956 298 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
21277677 21277677 PRJNA900028_P_NODE_56397_length_201_cov_1.000000_g55648_i0 PRJNA900028 56397 201 1 2.01 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 372 1.18e-98   NTclustered gi|701726736|gb|KM220702.1| 5778 g55648 i0 100 100.189054726368 201 0 100 0 1 201 15 215 Vermamoeba vermiformis isolate 143A 18S ribosomal RNA gene, partial sequence blastn 20138 372 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;