RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA900028" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA900028 · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
875637 875637 PRJNA900028_P_NODE_46181_length_212_cov_1.877301_g45432_i0 PRJNA900028 46181 212 1.877301 3.97987812 Camacolaimus sp. OVN-2021 2893397 Nematoda Nematoda 327 2.77e-85   NTclustered gi|2130729777|gb|OL416397.1| 2893397 g45432 i0 94.258 98.9056603773585 209 12 99 0 4 212 1878 2086 Camacolaimus sp. OVN-2021 isolate 2020-8 large subunit ribosomal RNA gene, partial sequence blastn 20968 327 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Plectida Leptolaimidae Camacolaimus Camacolaimus sp. OVN-2021
5977855 5977855 PRJNA900028_P_NODE_13165_length_315_cov_2.759398_g12417_i0 PRJNA900028 13165 315 2.759398 8.6921037 Bursaphelenchus ussuriensis 3375378 Nematoda Nematoda 316 9.47e-82   NTclustered gi|2838470513|gb|PQ500562.1| 3375378 g12417 i0 84.906 48.384126984127 318 40 100 8 1 315 5837 6149 Bursaphelenchus ussuriensis isolate CD4139 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 15241 316 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus ussuriensis
7623459 7623459 PRJNA900028_P_NODE_56606_length_200_cov_1.966887_g55857_i0 PRJNA900028 56606 200 1.966887 3.933774 Aphelenchoides 90723 Nematoda Nematoda 364 1.96e-96   NTclustered gi|1219413554|gb|KY510838.1| 269767 g55857 i0 99.5 99.895 200 1 100 0 1 200 1535 1336 Aphelenchoides besseyi isolate 7 small subunit ribosomal RNA gene, partial sequence blastn 19979 364 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides besseyi
18726972 18726972 PRJNA900028_P_NODE_4075_length_533_cov_1.663223_g3350_i0 PRJNA900028 4075 533 1.663223 8.86497859 Aphelenchoides ritzemabosi 409481 Nematoda Nematoda 870 0   NTclustered gi|1537068321|gb|MK301116.1| 409481 g3350 i0 98.004 89.4727954971857 501 10 94 0 33 533 1 501 Aphelenchoides ritzemabosi isolate 3971 small subunit ribosomal RNA gene, partial sequence blastn 47689 870 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides ritzemabosi
22552561 22552561 PRJNA900028_P_NODE_54778_length_202_cov_1.895425_g54029_i0 PRJNA900028 54778 202 1.895425 3.8287585 Setostephanolaimus sp. OVN-2021 2893399 Nematoda Nematoda 241 3.5e-59   NTclustered gi|2130729779|gb|OL416399.1| 2893399 g54029 i0 89.529 65.7178217821782 191 19 94 1 11 200 2190 2380 Setostephanolaimus sp. OVN-2021 large subunit ribosomal RNA gene, partial sequence blastn 13275 241 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Plectida Camacolaimidae Setostephanolaimus Setostephanolaimus sp. OVN-2021
22552745 22552745 PRJNA900028_P_NODE_70598_length_189_cov_1.407143_g69849_i0 PRJNA900028 70598 189 1.407143 2.65950027 Poikilolaimus oxycercus 96659 Nematoda Nematoda 350 5.14e-92   NTclustered gi|158821920|gb|EU195984.1| 96659 g69849 i0 100 101.349206349206 189 0 100 0 1 189 1924 1736 Poikilolaimus oxycercus strain SB200 28S ribosomal RNA gene, partial sequence blastn 19155 350 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Poikilolaimus Poikilolaimus oxycercus
25101587 25101587 PRJNA900028_P_NODE_4520_length_504_cov_2.210989_g3789_i0 PRJNA900028 4520 504 2.210989 11.14338456 Bursaphelenchus xylophilus 6326 Nematoda Nematoda 523 8.689999999999998e-144   NTclustered gi|2437461975|gb|ON496984.1| 6326 g3789 i0 86.179 89.625 492 59 97 9 18 504 6373 6860 Bursaphelenchus xylophilus isolate F0426-5 28S large subunit ribosomal RNA gene, partial sequence; and 28S-18S ribosomal RNA intergenic spacer, 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 45171 523 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus xylophilus
28887275 28887275 PRJNA900028_P_NODE_120368_length_167_cov_0.864407_g119619_i0 PRJNA900028 120368 167 0.864407 1.44355969 Caenorhabditis nigoni 1611254 Nematoda Nematoda 53.1 2.53e-7   NR PIC13180.1 1611254 g119619 i0 53.5 0.772455089820359 43 20 77.2 0 18 146 50 92 PIC13180.1 hypothetical protein B9Z55_027841 [Caenorhabditis nigoni] diamond 129 53.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis nigoni

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;