RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA900028", tax_phylum = "Hofneiviricota" and tax_superkingdom = "Viruses"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

  • Viruses · 3 ✖

tax_phylum 1

  • Hofneiviricota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA900028 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16177226 16177226 PRJNA900028_P_NODE_125053_length_167_cov_0.864407_g124304_i0 PRJNA900028 125053 167 0.864407 1.44355969 Inoviridae sp. 2219103 Viruses Viruses 276 7.64e-70   NTclustered gi|2906148684|gb|PQ646409.1| 2219103 g124304 i0 96.407 42.718562874251496 167 6 100 0 1 167 544 710 MAG: Inoviridae sp. isolate k127_3961725 genomic sequence blastn 7134 276 1 Viruses   Loebvirae Hofneiviricota Faserviricetes Tubulavirales Inoviridae   Inoviridae sp.
20001229 20001229 PRJNA900028_P_NODE_13796_length_310_cov_0.977011_g13048_i0 PRJNA900028 13796 310 0.977011 3.0287341 Inoviridae sp. 2219103 Viruses Viruses 54.7 0.008   NTclustered gi|2052974669|tpg|BK030493.1| 2219103 g13048 i0 100 0.0935483870967742 29 0 9 0 141 169 144 116 MAG TPA_asm: Inoviridae sp. isolate ctCBR15, partial genome blastn 29 54.7 1 Viruses   Loebvirae Hofneiviricota Faserviricetes Tubulavirales Inoviridae   Inoviridae sp.
32647713 32647713 PRJNA900028_P_NODE_180640_length_162_cov_0.902655_g179891_i0 PRJNA900028 180640 162 0.902655 1.4623011 Dulem virus 62 3145773 Viruses Viruses 47 9.32e-5   NR XCD05923.1 3145773 g179891 i0 45.2 0.777777777777778 42 23 77.8 0 162 37 67 108 XCD05923.1 hypothetical protein [Dulem virus 62] diamond 126 47 1 Viruses   Loebvirae Hofneiviricota Faserviricetes Tubulavirales Inoviridae Inovirus Dulem virus 62

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;