RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where bioproject = "PRJNA900028", tax_kingdom = "Thermotogati" and tax_phylum = "Synergistota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Synergistota · 5 ✖

tax_kingdom 1

  • Thermotogati · 5 ✖

bioproject 1

  • PRJNA900028 · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8527725 8527725 PRJNA900028_P_NODE_164347_length_163_cov_1.789474_g163598_i0 PRJNA900028 164347 163 1.789474 2.91684262 Fretibacterium fastidiosum 651822 Bacteria Bacteria 268 1.24e-67   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g163598 i0 96.319 3 163 6 100 0 1 163 382809 382971 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 489 268 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum
28413957 28413957 PRJNA900028_P_NODE_90606_length_180_cov_1.541985_g89857_i0 PRJNA900028 90606 180 1.541985 2.775573 uncultured Fretibacterium sp. 1678694 Bacteria Bacteria 110 2.19e-26   NR WP_299079903.1 1678694 g89857 i0 94.9 1.96666666666667 59 3 98.3 0 2 178 119 177 WP_299079903.1 methyl-accepting chemotaxis protein [uncultured Fretibacterium sp.] diamond 354 110 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium uncultured Fretibacterium sp.
30505820 30505820 PRJNA900028_P_NODE_90173_length_180_cov_1.557252_g89424_i0 PRJNA900028 90173 180 1.557252 2.8030536 Fretibacterium 1434006 Bacteria Bacteria 114 7.49e-28   NR WP_299298098.1 1678694 g89424 i0 93.2 2.91666666666667 59 4 98.3 0 177 1 495 553 WP_299298098.1 DEAD/DEAH box helicase [uncultured Fretibacterium sp.] diamond 525 114 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium uncultured Fretibacterium sp.
31825644 31825644 PRJNA900028_P_NODE_194937_length_161_cov_0.910714_g194188_i0 PRJNA900028 194937 161 0.910714 1.46624954 uncultured Fretibacterium sp. 1678694 Bacteria Bacteria 113 2.22e-30   NR WP_366518379.1 1678694 g194188 i0 100 0.987577639751553 53 0 98.8 0 2 160 66 118 WP_366518379.1 GlyGly-CTERM sorting domain-containing protein [uncultured Fretibacterium sp.] diamond 159 113 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium uncultured Fretibacterium sp.
32647720 32647720 PRJNA900028_P_NODE_197960_length_161_cov_0.883929_g197211_i0 PRJNA900028 197960 161 0.883929 1.42312569 Fretibacterium sp. OH122 2699746 Bacteria Bacteria 71.2 1.07e-12   NR WP_124888244.1 2491047 g197211 i0 97.2 0.670807453416149 36 1 67.1 0 53 160 32 67 WP_124888244.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Fretibacterium sp. OH1220_COT-178] diamond 108 71.2 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium sp. OH1220_COT-178

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;