RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA900028", tax_kingdom = "Pararnavirae" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 2 ✖

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 2 ✖

bioproject 1

  • PRJNA900028 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3425045 3425045 PRJNA900028_P_NODE_100183_length_176_cov_0.976378_g99434_i0 PRJNA900028 100183 176 0.976378 1.71842528 Citrus endogenous pararetrovirus 1435008 Viruses Viruses 239 1.06e-58   NTclustered gi|1189354729|gb|KY609920.1| 1435008 g99434 i0 91.379 4.94318181818182 174 15 99 0 1 174 3912 3739 Citrus endogenous pararetrovirus strain SPBR01 polyprotein gene, complete cds blastn 870 239 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae   Citrus endogenous pararetrovirus
14902473 14902473 PRJNA900028_P_NODE_124932_length_167_cov_0.864407_g124183_i0 PRJNA900028 124932 167 0.864407 1.44355969 Gammaretrovirus porConc 3428960 Viruses Viruses 309 7.53e-80   NTclustered gi|333034208|gb|HQ540592.1| 194958 g124183 i0 100 1 167 0 100 0 1 167 3296 3462 Porcine endogenous retrovirus A clone 1347C1, complete genome blastn 167 309 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus porConc

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;