RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA900028", tax_kingdom = "Methanobacteriati" and tax_phylum = "Thermoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Thermoplasmatota · 2 ✖

tax_kingdom 1

  • Methanobacteriati · 2 ✖

bioproject 1

  • PRJNA900028 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29960977 29960977 PRJNA900028_P_NODE_32151_length_235_cov_1.096774_g31402_i0 PRJNA900028 32151 235 1.096774 2.5774189 Methanomethylophilus sp. 2774294 Archaea Archaea 104 4.37e-25   NR MDD2626962.1 2774294 g31402 i0 67.1 1.00851063829787 79 25 99.6 1 234 1 122 200 MDD2626962.1 ATPase, T2SS/T4P/T4SS family [Methanomethylophilus sp.] diamond 237 104 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales Methanomethylophilaceae Methanomethylophilus Methanomethylophilus sp.
31383084 31383084 PRJNA900028_P_NODE_103956_length_174_cov_1.224000_g103207_i0 PRJNA900028 103956 174 1.224 2.12976 Methanomethylophilus sp. 2774294 Archaea Archaea 54.7 8.17e-7   NR MDD2626961.1 2774294 g103207 i0 41.4 1 58 34 100 0 1 174 45 102 MDD2626961.1 type II secretion system F family protein [Methanomethylophilus sp.] diamond 174 54.7 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales Methanomethylophilaceae Methanomethylophilus Methanomethylophilus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;