RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

20 rows where bioproject = "PRJNA900028" and tax_kingdom = "Methanobacteriati"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_kingdom 1

  • Methanobacteriati · 20 ✖

bioproject 1

  • PRJNA900028 · 20 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1244622 1244622 PRJNA900028_P_NODE_114721_length_169_cov_1.241667_g113972_i0 PRJNA900028 114721 169 1.241667 2.09841723 Methanothrix 2222 Archaea Archaea 313 5.859999999999999e-81   NTclustered gi|507148322|ref|NR_103125.1| 2223 g113972 i0 100 16.6449704142012 169 0 100 0 1 169 310 142 Methanosaeta concilii strain GP6 23S ribosomal RNA gene, complete sequence blastn 2813 313 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix soehngenii
20001915 20001915 PRJNA900028_P_NODE_2436_length_709_cov_1.093939_g1766_i0 PRJNA900028 2436 709 1.093939 7.75602751 Salinigranum rubrum 755307 Archaea Archaea 56.5 0.005   NTclustered gi|1336549475|gb|CP026309.1| 755307 g1766 i0 89.362 0.0662905500705219 47 2 7 3 242 288 2303461 2303418 Salinigranum rubrum strain GX10 chromosome, complete genome blastn 47 56.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Salinigranum Salinigranum rubrum
25100935 25100935 PRJNA900028_P_NODE_168280_length_163_cov_0.894737_g167531_i0 PRJNA900028 168280 163 0.894737 1.45842131 Methanobrevibacter acididurans 120963 Archaea Archaea 110 7.95e-20   NTclustered gi|2871247231|gb|CP166991.1| 120963 g167531 i0 83.333 4.07361963190184 120 18 73 2 37 155 857234 857352 Methanobrevibacter acididurans strain DSM 15163 chromosome, complete genome blastn 664 110 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter acididurans
26968438 26968438 PRJNA900028_P_NODE_195962_length_161_cov_0.910714_g195213_i0 PRJNA900028 195962 161 0.910714 1.46624954 Halobacteriales 2235 Archaea Archaea 81.6 1.91e-17   NR WP_121744904.1 1702106 g195213 i0 78.8 2.92546583850932 52 11 96.9 0 159 4 6 57 WP_121744904.1 recombinase family protein [Natronorubrum halophilum] diamond 471 82.4 0.990291262135922 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natronorubrum Natronorubrum halophilum
28231714 28231714 PRJNA900028_P_NODE_155186_length_164_cov_0.886957_g154437_i0 PRJNA900028 155186 164 0.886957 1.45460948 Methanobacterium 2160 Archaea Archaea 103 6.73e-25   NR WP_286475775.1 2584467 g154437 i0 96.3 9.87804878048781 54 2 98.8 0 2 163 138 191 WP_286475775.1 hydroxymethylglutaryl-CoA synthase [Methanobacterium aridiramus] diamond 1620 104 0.990384615384615 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium aridiramus
28326577 28326577 PRJNA900028_P_NODE_148206_length_165_cov_0.879310_g147457_i0 PRJNA900028 148206 165 0.87931 1.4508615 root 1 Root_unresolved Root_unresolved 51.2 1.3e-5   NR RQW80199.1 90426 g147457 i0 52.5 6.58181818181818 40 19 72.7 0 161 42 368 407 RQW80199.1 MAG: DNA helicase RecQ [Methanothrix sp.] diamond 1086 51.2 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix sp.
28389826 28389826 PRJNA900028_P_NODE_178846_length_162_cov_0.902655_g178097_i0 PRJNA900028 178846 162 0.902655 1.4623011 Natronomonas 63743 Archaea Archaea 43.1 0.00905   NR WP_410321013.1 2184060 g178097 i0 88 1.38888888888889 25 3 46.3 0 11 85 1 25 WP_410321013.1 DUF2298 domain-containing protein [Natronomonas sp.] diamond 225 43.5 0.990804597701149 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natronomonadaceae Natronomonas Natronomonas sp.
28413897 28413897 PRJNA900028_P_NODE_132526_length_166_cov_0.871795_g131777_i0 PRJNA900028 132526 166 0.871795 1.4471797 Halodesulfurarchaeum sp. 1980530 Archaea Archaea 99.8 9.14e-23   NR MBS3761550.1 1980530 g131777 i0 92.5 0.957831325301205 53 4 95.8 0 159 1 434 486 MBS3761550.1 molybdopterin-dependent oxidoreductase [Halodesulfurarchaeum sp.] diamond 159 99.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halodesulfurarchaeum Halodesulfurarchaeum sp.
28484658 28484658 PRJNA900028_P_NODE_56926_length_200_cov_1.350993_g56177_i0 PRJNA900028 56926 200 1.350993 2.701986 root 1 Root_unresolved Root_unresolved 94.7 5.22e-21   NR MDD1724742.1 45200 g56177 i0 63.6 38.535 66 24 99 0 2 199 148 213 MDD1724742.1 cysteine desulfurase NifS [Methanospirillum sp.] diamond 7707 94.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanospirillaceae Methanospirillum Methanospirillum sp.
29589356 29589356 PRJNA900028_P_NODE_185330_length_162_cov_0.902655_g184581_i0 PRJNA900028 185330 162 0.902655 1.4623011 Halobacteriales 2235 Archaea Archaea 89.4 4.62e-19   NR MFB6202471.1 1961697 g184581 i0 77.4 1.96296296296296 53 12 98.1 0 3 161 506 558 MFB6202471.1 winged helix-turn-helix domain-containing protein [Halorhabdus sp.] diamond 318 89.4 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Halorhabdus Halorhabdus sp.
29960977 29960977 PRJNA900028_P_NODE_32151_length_235_cov_1.096774_g31402_i0 PRJNA900028 32151 235 1.096774 2.5774189 Methanomethylophilus sp. 2774294 Archaea Archaea 104 4.37e-25   NR MDD2626962.1 2774294 g31402 i0 67.1 1.00851063829787 79 25 99.6 1 234 1 122 200 MDD2626962.1 ATPase, T2SS/T4P/T4SS family [Methanomethylophilus sp.] diamond 237 104 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales Methanomethylophilaceae Methanomethylophilus Methanomethylophilus sp.
30245573 30245573 PRJNA900028_P_NODE_67852_length_190_cov_1.446809_g67103_i0 PRJNA900028 67852 190 1.446809 2.7489371 Methanogenium sp. 2196 Archaea Archaea 58.2 6.13e-8   NR MFA5395000.1 2196 g67103 i0 41.3 1.98947368421053 63 37 99.5 0 1 189 46 108 MFA5395000.1 HAD family acid phosphatase [Methanogenium sp.] diamond 378 58.2 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanogenium Methanogenium sp.
30403772 30403772 PRJNA900028_P_NODE_174273_length_163_cov_0.894737_g173524_i0 PRJNA900028 174273 163 0.894737 1.45842131 Methanobacterium 2160 Archaea Archaea 103 6.4999999999999985e-24   NR WP_100906157.1 2160 g173524 i0 88.9 0.993865030674847 54 6 99.4 0 2 163 498 551 WP_100906157.1 MULTISPECIES: thioredoxin domain-containing protein [Methanobacterium] diamond 162 103 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium  
30687572 30687572 PRJNA900028_P_NODE_161433_length_164_cov_0.886957_g160684_i0 PRJNA900028 161433 164 0.886957 1.45460948 Haloplanus sp. GCM1 1961696 Archaea Archaea 77.8 1.73e-16   NR WP_379798203.1 3252679 g160684 i0 82.6 0.841463414634146 46 8 84.1 0 26 163 1 46 WP_379798203.1 hypothetical protein [Haloplanus sp. GCM10025708] diamond 138 77.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloplanus Haloplanus sp. GCM10025708
30750936 30750936 PRJNA900028_P_NODE_143414_length_165_cov_0.879310_g142665_i0 PRJNA900028 143414 165 0.87931 1.4508615 Halorubrum miltondacostae 3076378 Archaea Archaea 114 6.03e-29   NR WP_371163206.1 3076378 g142665 i0 94.4 0.981818181818182 54 3 98.2 0 163 2 104 157 WP_371163206.1 dipeptidase [Halorubrum miltondacostae] diamond 162 114 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum miltondacostae
30972186 30972186 PRJNA900028_P_NODE_55434_length_202_cov_1.000000_g54685_i0 PRJNA900028 55434 202 1 2.02 Methanoregula sp. 2052170 Archaea Archaea 63.5 7.78e-10   NR HSQ94427.1 2052170 g54685 i0 50.8 2.62871287128713 63 31 93.6 0 202 14 144 206 HSQ94427.1 PP2C family serine/threonine-protein phosphatase [Methanoregula sp.] diamond 531 63.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula Methanoregula sp.
30972194 30972194 PRJNA900028_P_NODE_72134_length_188_cov_1.467626_g71385_i0 PRJNA900028 72134 188 1.467626 2.75913688 Halobellus ruber 2761102 Archaea Archaea 93.2 2.44e-21   NR WP_185193430.1 2761102 g71385 i0 66.7 0.957446808510638 60 20 95.7 0 3 182 158 217 WP_185193430.1 DUF547 domain-containing protein [Halobellus ruber] diamond 180 93.2 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halobellus Halobellus ruber
31383084 31383084 PRJNA900028_P_NODE_103956_length_174_cov_1.224000_g103207_i0 PRJNA900028 103956 174 1.224 2.12976 Methanomethylophilus sp. 2774294 Archaea Archaea 54.7 8.17e-7   NR MDD2626961.1 2774294 g103207 i0 41.4 1 58 34 100 0 1 174 45 102 MDD2626961.1 type II secretion system F family protein [Methanomethylophilus sp.] diamond 174 54.7 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales Methanomethylophilaceae Methanomethylophilus Methanomethylophilus sp.
31572945 31572945 PRJNA900028_P_NODE_166976_length_163_cov_0.894737_g166227_i0 PRJNA900028 166976 163 0.894737 1.45842131 Methanobacterium sp. MZD13 2164 Archaea Archaea 87.8 1.27e-19   NR WP_416113749.1 3394378 g166227 i0 88.9 0.993865030674847 54 6 99.4 0 162 1 99 152 WP_416113749.1 triose-phosphate isomerase [Methanobacterium sp. MZD130B] diamond 162 87.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp. MZD130B
32742675 32742675 PRJNA900028_P_NODE_90340_length_180_cov_1.557252_g89591_i0 PRJNA900028 90340 180 1.557252 2.8030536 Methanobrevibacter sp. 66852 Archaea Archaea 82 2.46e-17   NR MBR2557691.1 66852 g89591 i0 73.2 0.933333333333333 56 15 93.3 0 9 176 75 130 MBR2557691.1 IS607 family transposase [Methanobrevibacter sp.] diamond 168 82 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;