RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA900028", tax_clade = "SAR202 cluster" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 1 ✖

tax_kingdom 1

tax_clade 1

  • SAR202 cluster · 1 ✖

bioproject 1

  • PRJNA900028 · 1 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
32585299 32585299 PRJNA900028_P_NODE_77719_length_186_cov_1.226277_g76970_i0 PRJNA900028 77719 186 1.226277 2.28087522 SAR202 cluster bacterium 2030829 Bacteria Bacteria 63.5 5.54e-11   NR MBM3949419.1 2030829 g76970 i0 48.3 0.935483870967742 58 30 93.5 0 2 175 51 108 MBM3949419.1 hypothetical protein [SAR202 cluster bacterium] diamond 174 63.5 1 Bacteria SAR202 cluster Bacillati Chloroflexota Dehalococcoidia       SAR202 cluster bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;