RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA900028", tax_clade = "PVC group" and tax_phylum = "Lentisphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA900028 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29361069 29361069 PRJNA900028_P_NODE_135909_length_166_cov_0.871795_g135160_i0 PRJNA900028 135909 166 0.871795 1.4471797 Lentisphaeria bacterium 2053569 Bacteria Bacteria 47 4.13e-4   NR HCE46544.1 2053569 g135160 i0 46 1.82530120481928 50 26 90.4 1 158 9 4053 4101 HCE46544.1 hypothetical protein [Lentisphaeria bacterium] diamond 303 47 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria       Lentisphaeria bacterium
31192833 31192833 PRJNA900028_P_NODE_13615_length_311_cov_1.549618_g12867_i0 PRJNA900028 13615 311 1.549618 4.81931198 Victivallales bacterium 2212475 Bacteria Bacteria 75.1 4.97e-14   NR MBQ4479028.1 2212475 g12867 i0 40.6 0.97427652733119 101 47 84.9 2 266 3 6 106 MBQ4479028.1 Eco29kI family restriction endonuclease [Victivallales bacterium] diamond 303 75.1 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales     Victivallales bacterium
31541241 31541241 PRJNA900028_P_NODE_196196_length_161_cov_0.910714_g195447_i0 PRJNA900028 196196 161 0.910714 1.46624954 Victivallales bacterium 2212475 Bacteria Bacteria 62 1.93e-9   NR MBT3291152.1 2212475 g195447 i0 54.7 0.987577639751553 53 23 98.8 1 2 160 177 228 MBT3291152.1 alpha-mannosidase [Victivallales bacterium] diamond 159 62 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales     Victivallales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;