RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA900028", tax_clade = "Methanomada group" and tax_phylum = "Methanobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 5 ✖

tax_kingdom 1

tax_clade 1

  • Methanomada group · 5 ✖

bioproject 1

  • PRJNA900028 · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25100935 25100935 PRJNA900028_P_NODE_168280_length_163_cov_0.894737_g167531_i0 PRJNA900028 168280 163 0.894737 1.45842131 Methanobrevibacter acididurans 120963 Archaea Archaea 110 7.95e-20   NTclustered gi|2871247231|gb|CP166991.1| 120963 g167531 i0 83.333 4.07361963190184 120 18 73 2 37 155 857234 857352 Methanobrevibacter acididurans strain DSM 15163 chromosome, complete genome blastn 664 110 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter acididurans
28231714 28231714 PRJNA900028_P_NODE_155186_length_164_cov_0.886957_g154437_i0 PRJNA900028 155186 164 0.886957 1.45460948 Methanobacterium 2160 Archaea Archaea 103 6.73e-25   NR WP_286475775.1 2584467 g154437 i0 96.3 9.87804878048781 54 2 98.8 0 2 163 138 191 WP_286475775.1 hydroxymethylglutaryl-CoA synthase [Methanobacterium aridiramus] diamond 1620 104 0.990384615384615 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium aridiramus
30403772 30403772 PRJNA900028_P_NODE_174273_length_163_cov_0.894737_g173524_i0 PRJNA900028 174273 163 0.894737 1.45842131 Methanobacterium 2160 Archaea Archaea 103 6.4999999999999985e-24   NR WP_100906157.1 2160 g173524 i0 88.9 0.993865030674847 54 6 99.4 0 2 163 498 551 WP_100906157.1 MULTISPECIES: thioredoxin domain-containing protein [Methanobacterium] diamond 162 103 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium  
31572945 31572945 PRJNA900028_P_NODE_166976_length_163_cov_0.894737_g166227_i0 PRJNA900028 166976 163 0.894737 1.45842131 Methanobacterium sp. MZD13 2164 Archaea Archaea 87.8 1.27e-19   NR WP_416113749.1 3394378 g166227 i0 88.9 0.993865030674847 54 6 99.4 0 162 1 99 152 WP_416113749.1 triose-phosphate isomerase [Methanobacterium sp. MZD130B] diamond 162 87.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp. MZD130B
32742675 32742675 PRJNA900028_P_NODE_90340_length_180_cov_1.557252_g89591_i0 PRJNA900028 90340 180 1.557252 2.8030536 Methanobrevibacter sp. 66852 Archaea Archaea 82 2.46e-17   NR MBR2557691.1 66852 g89591 i0 73.2 0.933333333333333 56 15 93.3 0 9 176 75 130 MBR2557691.1 IS607 family transposase [Methanobrevibacter sp.] diamond 168 82 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;