RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA900028", tax_clade = "FCB group" and tax_phylum = "Chlorobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA900028 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4703697 4703697 PRJNA900028_P_NODE_184604_length_162_cov_0.902655_g183855_i0 PRJNA900028 184604 162 0.902655 1.4623011 Chlorobaculum limnaeum 274537 Bacteria Bacteria 139 1.01e-28   NTclustered gi|1070918267|gb|CP017305.1| 274537 g183855 i0 83.673 1.61728395061728 147 24 91 0 4 150 1382692 1382838 Chlorobaculum limnaeum strain DSM 1677 chromosome, complete genome blastn 262 139 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobaculum Chlorobaculum limnaeum
7253325 7253325 PRJNA900028_P_NODE_196086_length_161_cov_0.910714_g195337_i0 PRJNA900028 196086 161 0.910714 1.46624954 Chlorobaculum sp. MV4-Y 2976335 Bacteria Bacteria 52.8 0.013   NTclustered gi|2304448134|gb|CP104202.1| 2976335 g195337 i0 100 0.173913043478261 28 0 17 0 124 151 318400 318373 Chlorobaculum sp. MV4-Y chromosome, complete genome blastn 28 52.8 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobaculum Chlorobaculum sp. MV4-Y
32245076 32245076 PRJNA900028_P_NODE_178918_length_162_cov_0.902655_g178169_i0 PRJNA900028 178918 162 0.902655 1.4623011 Pseudomonadati 3379134 Bacteria Bacteria 70.1 2.74e-12   NR MBV5330742.1 1095 g178169 i0 60.4 3.92592592592593 53 21 98.1 0 160 2 177 229 MBV5330742.1 glycosyltransferase [Chlorobium sp.] diamond 636 70.1 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobium Chlorobium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;