RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA900028", tax_clade = "FCB group" and tax_phylum = "Candidatus Latescibacterota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Latescibacterota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA900028 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27411348 27411348 PRJNA900028_P_NODE_109923_length_171_cov_1.360656_g109174_i0 PRJNA900028 109923 171 1.360656 2.32672176 FCB group 1783270 Bacteria Bacteria 66.6 5.1e-11   NR MBT5876237.1 2053570 g109174 i0 60.3 3.01754385964912 58 21 98.2 1 3 170 239 296 MBT5876237.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme [Candidatus Latescibacterota bacterium] diamond 516 66.6 1 Bacteria FCB group Pseudomonadati Candidatus Latescibacterota         Candidatus Latescibacterota bacterium
31888953 31888953 PRJNA900028_P_NODE_149977_length_165_cov_0.879310_g149228_i0 PRJNA900028 149977 165 0.87931 1.4508615 Candidatus Latescibacterota bacterium 2053570 Bacteria Bacteria 66.2 5.12e-11   NR MFT5375220.1 2053570 g149228 i0 55.8 0.945454545454545 52 23 94.5 0 159 4 137 188 MFT5375220.1 DNA-binding transcriptional MerR regulator [Candidatus Latescibacterota bacterium] diamond 156 66.2 1 Bacteria FCB group Pseudomonadati Candidatus Latescibacterota         Candidatus Latescibacterota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;