RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA900028", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Altimarinota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Altimarinota · 4 ✖

tax_clade 1

  • Bacteria candidate phyla · 4 ✖

bioproject 1

  • PRJNA900028 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27403539 27403539 PRJNA900028_P_NODE_113243_length_169_cov_1.700000_g112494_i0 PRJNA900028 113243 169 1.7 2.873 Candidatus Gracilibacteria bacterium GN 2044595 Bacteria Bacteria 69.3 5.84e-12   NR RAL55859.1 1912928 g112494 i0 97.3 0.656804733727811 37 1 65.7 0 59 169 794 830 RAL55859.1 hypothetical protein BLD25_03415 [Candidatus Gracilibacteria bacterium GN02-872] diamond 111 69.3 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium GN02-872
28982384 28982384 PRJNA900028_P_NODE_71908_length_188_cov_1.784173_g71159_i0 PRJNA900028 71908 188 1.784173 3.35424524 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 125 1.08e-31   NR MBF0981424.1 2044595 g71159 i0 100 0.98936170212766 62 0 98.9 0 1 186 402 463 MBF0981424.1 DEAD/DEAH box helicase [Candidatus Altimarinota bacterium] diamond 186 125 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
30055596 30055596 PRJNA900028_P_NODE_103751_length_174_cov_1.272000_g103002_i0 PRJNA900028 103751 174 1.272 2.21328 Candidatus Gracilibacteria bacterium GN 2044595 Bacteria Bacteria 51.6 3.97e-6   NR RAL56365.1 1914866 g103002 i0 89.7 0.5 29 3 50 0 131 45 133 161 RAL56365.1 hypothetical protein BLM37_02505 [Candidatus Gracilibacteria bacterium GN02-873] diamond 87 51.6 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium GN02-873
31035525 31035525 PRJNA900028_P_NODE_132815_length_166_cov_0.871795_g132066_i0 PRJNA900028 132815 166 0.871795 1.4471797 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 102 1.25e-24   NR RKW24476.1 2044595 g132066 i0 98.1 0.975903614457831 54 1 97.6 0 164 3 213 266 RKW24476.1 MAG: NAD(P)H-dependent glycerol-3-phosphate dehydrogenase [Candidatus Altimarinota bacterium] diamond 162 102 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;