RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA898105" and tax_phylum = "Mucoromycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Mucoromycota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA898105 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2519857 2519857 PRJNA898105_P_NODE_1542_length_490_cov_3.213429_g1342_i0 PRJNA898105 1542 490 3.213429 15.7458021 Fungi 4751 Fungi Fungi 898 0   NTclustered gi|1694443677|ref|NG_065498.1| 4841 g1342 i0 99.796 99.9775510204082 490 0 100 1 1 490 1094 606 Mucor racemosus NRRL 3640 18S rRNA gene, partial sequence; from TYPE material blastn 48989 898 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Mucoraceae Mucor Mucor racemosus
2519872 2519872 PRJNA898105_P_NODE_3702_length_300_cov_2.643172_g3502_i0 PRJNA898105 3702 300 2.643172 7.929516 Fungi 4751 Fungi Fungi 555 1.7399999999999995e-153   NTclustered gi|358001175|gb|JN938898.1| 4841 g3502 i0 100 99.26 300 0 100 0 1 300 300 1 Mucor racemosus strain DAOM 229663 28S ribosomal RNA (LSU) gene, partial sequence blastn 29778 555 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Mucoraceae Mucor Mucor racemosus
20000424 20000424 PRJNA898105_P_NODE_3036_length_337_cov_3.640152_g2836_i0 PRJNA898105 3036 337 3.640152 12.26731224 Jimgerdemannia lactiflua 324621 Fungi Fungi 291 6.19e-74   NTclustered gi|937343935|dbj|LC002624.1| 324621 g2836 i0 82.849 101.06528189911 344 40 100 14 1 337 641 310 Jimgerdemannia lactiflua genes for internal transcribed spacer 2, 28S rRNA, partial sequence, specimen_voucher: KPM:NC0024220 blastn 34059 291 1 Eukaryota Opisthokonta Fungi Mucoromycota Endogonomycetes Endogonales Endogonaceae Jimgerdemannia Jimgerdemannia lactiflua
23826002 23826002 PRJNA898105_P_NODE_6119_length_251_cov_0.865169_g5919_i0 PRJNA898105 6119 251 0.865169 2.17157419 Phycomyces blakesleeanus 4837 Fungi Fungi 163 1.01e-35   NTclustered gi|1069961775|ref|XM_018434099.1| 763407 g5919 i0 78.4 6.90438247011952 250 54 99 0 1 250 2290 2041 Phycomyces blakesleeanus NRRL 1555(-) hypothetical protein partial mRNA blastn 1733 163 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Phycomycetaceae Phycomyces Phycomyces blakesleeanus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;