RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA898105" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA898105 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23825975 23825975 PRJNA898105_P_NODE_3859_length_292_cov_1.812785_g3659_i0 PRJNA898105 3859 292 1.812785 5.2933322 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 368 2.37e-97   NTclustered gi|2874253978|emb|OY970303.1| 412054 g3659 i0 92.075 421.47602739726 265 15 90 6 1 262 1904744 1904483 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 123071 368 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
28950744 28950744 PRJNA898105_P_NODE_6568_length_249_cov_0.875000_g6368_i0 PRJNA898105 6568 249 0.875 2.17875 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 162 1.19e-47   NR MBK6307704.1 2026742 g6368 i0 93.9 1.97590361445783 82 5 98.8 0 247 2 28 109 MBK6307704.1 replication initiator protein A [Gemmatimonadota bacterium] diamond 492 162 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;