RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA898105" and tax_phylum = "Deinococcota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Deinococcota · 8 ✖

tax_kingdom 1

bioproject 1

  • PRJNA898105 · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6348226 6348226 PRJNA898105_P_NODE_4785_length_276_cov_1.320197_g4585_i0 PRJNA898105 4785 276 1.320197 3.64374372 Thermus 270 Bacteria Bacteria 499 7.54e-137   NTclustered gi|320149275|gb|CP001962.1| 743525 g4585 i0 99.275 56.1268115942029 276 2 100 0 1 276 1166085 1166360 Thermus scotoductus SA-01, complete genome blastn 15491 499 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus scotoductus
7251965 7251965 PRJNA898105_P_NODE_4486_length_281_cov_1.413462_g4286_i0 PRJNA898105 4486 281 1.413462 3.97182822 uncultured Deinococcus sp. 158789 Bacteria Bacteria 442 1.3199999999999993e-119   NTclustered gi|389546625|gb|JQ401553.1| 158789 g4286 i0 95.018 105.174377224199 281 14 100 0 1 281 638 358 Uncultured Deinococcus sp. clone CNY_01678 16S ribosomal RNA gene, partial sequence blastn 29554 442 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus uncultured Deinococcus sp.
9801734 9801734 PRJNA898105_P_NODE_6548_length_249_cov_0.875000_g6348_i0 PRJNA898105 6548 249 0.875 2.17875 Deinococcus peraridilitoris 432329 Bacteria Bacteria 99.4 2.4399999999999999e-23   NR WP_015235812.1 432329 g6348 i0 59.7 2.67469879518072 72 29 86.7 0 218 3 75 146 WP_015235812.1 3-hydroxybutyrate dehydrogenase [Deinococcus peraridilitoris] diamond 666 99.4 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus peraridilitoris
16546751 16546751 PRJNA898105_P_NODE_5393_length_265_cov_1.333333_g5193_i0 PRJNA898105 5393 265 1.333333 3.53333245 Deinococcus 1298 Bacteria Bacteria 484 2.0199999999999998e-132   NTclustered gi|1435316362|gb|CP031158.1| 980427 g5193 i0 99.623 28.622641509434 265 1 100 0 1 265 873446 873182 Deinococcus wulumuqiensis strain NEB 479 chromosome, complete genome blastn 7585 484 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus wulumuqiensis
19095761 19095761 PRJNA898105_P_NODE_5275_length_267_cov_1.463918_g5075_i0 PRJNA898105 5275 267 1.463918 3.90866106 Deinococcus 1298 Bacteria Bacteria 488 1.5699999999999998e-133   NTclustered gi|470488003|ref|NR_076846.1| 55148 g5075 i0 99.625 249.483146067416 267 1 100 0 1 267 1013 747 Deinococcus proteolyticus strain MRP 23S ribosomal RNA gene, complete sequence blastn 66612 488 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus proteolyticus
25470979 25470979 PRJNA898105_P_NODE_880_length_697_cov_3.243590_g693_i0 PRJNA898105 880 697 3.24359 22.6078223 Truepera 332248 Bacteria Bacteria 902 0   NTclustered gi|470486385|ref|NR_076754.1| 332249 g693 i0 90.762 182.691535150646 682 53 97 8 2 677 1920 1243 Truepera radiovictrix strain RQ-24 23S ribosomal RNA gene, complete sequence blastn 127336 902 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae Truepera Truepera radiovictrix
30150290 30150290 PRJNA898105_P_NODE_5752_length_258_cov_1.291892_g5552_i0 PRJNA898105 5752 258 1.291892 3.33308136 Deinococcus ficus 317577 Bacteria Bacteria 127 6.479999999999998e-35   NR WP_027464351.1 317577 g5552 i0 70.6 0.988372093023256 85 25 98.8 0 256 2 19 103 WP_027464351.1 hypothetical protein [Deinococcus ficus] diamond 255 127 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus ficus
32015572 32015572 PRJNA898105_P_NODE_7758_length_244_cov_0.900585_g7558_i0 PRJNA898105 7758 244 0.900585 2.1974274 Thermus sp. 275 Bacteria Bacteria 114 2.38e-27   NR MEN2982684.1 275 g7558 i0 98.2 0.700819672131147 57 1 70.1 0 72 242 1 57 MEN2982684.1 type IV secretory system conjugative DNA transfer family protein [Thermus sp.] diamond 171 114 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;