RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA898105", tax_phylum = "Chloroflexota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 4 ✖

tax_phylum 1

  • Chloroflexota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA898105 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3796181 3796181 PRJNA898105_P_NODE_7623_length_244_cov_1.497076_g7423_i0 PRJNA898105 7623 244 1.497076 3.65286544 Chloroflexus 1107 Bacteria Bacteria 172 1.62e-38   NTclustered gi|470483916|ref|NR_076619.1| 152260 g7423 i0 84.884 17.766393442623 172 24 70 2 63 233 2845 2675 Chloroflexus aggregans strain MD-66 23S ribosomal RNA gene, complete sequence blastn 4335 172 1 Bacteria   Bacillati Chloroflexota Chloroflexia Chloroflexales Chloroflexaceae Chloroflexus Chloroflexus aggregans
28698112 28698112 PRJNA898105_P_NODE_5627_length_260_cov_3.000000_g5427_i0 PRJNA898105 5627 260 3 7.8 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 42.4 0.0203   NR MSQ12268.1 2026734 g5427 i0 33.9 0.680769230769231 59 33 68.1 1 9 185 19 71 MSQ12268.1 hypothetical protein [Dehalococcoidia bacterium] diamond 177 42.4 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium
30277263 30277263 PRJNA898105_P_NODE_4892_length_274_cov_1.437811_g4692_i0 PRJNA898105 4892 274 1.437811 3.93960214 Anaerolineae bacterium 2052143 Bacteria Bacteria 43.9 0.0179   NR MCK6579200.1 2052143 g4692 i0 40 0.547445255474453 50 28 52.6 1 257 114 51 100 MCK6579200.1 hypothetical protein [Anaerolineae bacterium] diamond 150 43.9 1 Bacteria   Bacillati Chloroflexota Anaerolineae       Anaerolineae bacterium
32616534 32616534 PRJNA898105_P_NODE_7800_length_243_cov_1.652941_g7600_i0 PRJNA898105 7800 243 1.652941 4.01664663 Chloroflexota bacterium 2026724 Bacteria Bacteria 103 1.74e-25   NR MDQ3547859.1 2026724 g7600 i0 70.5 0.962962962962963 78 23 96.3 0 7 240 84 161 MDQ3547859.1 CYTH domain-containing protein [Chloroflexota bacterium] diamond 234 103 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;