RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA898105", tax_kingdom = "Pseudomonadati" and tax_phylum = "Myxococcota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 5 ✖

tax_kingdom 1

  • Pseudomonadati · 5 ✖

bioproject 1

  • PRJNA898105 · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8526638 8526638 PRJNA898105_P_NODE_4067_length_288_cov_0.874419_g3867_i0 PRJNA898105 4067 288 0.874419 2.51832672 Myxococcus stipitatus 83455 Bacteria Bacteria 527 3.63e-145   NTclustered gi|545790943|gb|KF270706.1| 83455 g3867 i0 99.653 237.427083333333 288 1 100 0 1 288 142 429 Myxococcus stipitatus strain Mxs33 23S ribosomal RNA gene, partial sequence blastn 68379 527 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcus Myxococcus stipitatus
12352754 12352754 PRJNA898105_P_NODE_5710_length_259_cov_1.102151_g5510_i0 PRJNA898105 5710 259 1.102151 2.85457109 Pendulispora brunnea 2905690 Bacteria Bacteria 387 5.69e-103   NTclustered gi|2698055994|gb|CP089982.1| 2905690 g5510 i0 94.8 160.359073359073 250 10 96 3 1 249 9037384 9037631 Pendulispora brunnea strain MSr12523 chromosome, complete genome blastn 41533 387 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora brunnea
20000439 20000439 PRJNA898105_P_NODE_4676_length_278_cov_1.297561_g4476_i0 PRJNA898105 4676 278 1.297561 3.60721958 Labilithrix luteola 1391654 Bacteria Bacteria 353 6.26e-93   NTclustered gi|913610804|gb|CP012333.1| 1391654 g4476 i0 89.643 31.0071942446043 280 25 100 4 1 278 7915510 7915787 Labilithrix luteola strain DSM 27648, complete genome blastn 8620 353 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
26802468 26802468 PRJNA898105_P_NODE_7201_length_246_cov_0.890173_g7001_i0 PRJNA898105 7201 246 0.890173 2.18982558 Polyangia bacterium 3058050 Bacteria Bacteria 67 4.01e-12   NR HVY41087.1 3058050 g7001 i0 70.2 1.75609756097561 47 14 57.3 0 245 105 51 97 HVY41087.1 DUF2325 domain-containing protein [Polyangia bacterium] diamond 432 67 1 Bacteria   Pseudomonadati Myxococcota         Polyangia bacterium
29992612 29992612 PRJNA898105_P_NODE_8031_length_242_cov_1.497041_g7831_i0 PRJNA898105 8031 242 1.497041 3.62283922 Polyangia bacterium 3058050 Bacteria Bacteria 52.8 1.1e-5   NR HEY8925458.1 3058050 g7831 i0 55.8 1.1900826446281 52 20 60.7 1 240 94 1315 1366 HEY8925458.1 chemotaxis protein CheB [Polyangia bacterium] diamond 288 52.8 1 Bacteria   Pseudomonadati Myxococcota         Polyangia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;