contig_metadata
5 rows where bioproject = "PRJNA898105", tax_kingdom = "Pseudomonadati" and tax_phylum = "Campylobacterota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 8526660 | 8526660 | PRJNA898105_P_NODE_6047_length_251_cov_1.634831_g5847_i0 | PRJNA898105 | 6047 | 251 | 1.634831 | 4.10342581 | Campylobacter ureolyticus | 827 | Bacteria | Bacteria | 448 | 2.48e-121 | NTclustered | gi|1966876394|gb|CP068487.1| | 827 | g5847 | i0 | 98.805 | 5 | 251 | 3 | 100 | 0 | 1 | 251 | 1689573 | 1689323 | Campylobacter ureolyticus strain FDAARGOS_1102 chromosome | blastn | 1255 | 448 | 1 | Bacteria | Pseudomonadati | Campylobacterota | Epsilonproteobacteria | Campylobacterales | Campylobacteraceae | Campylobacter | Campylobacter ureolyticus | ||
| 16546717 | 16546717 | PRJNA898105_P_NODE_1993_length_423_cov_1.834286_g1793_i0 | PRJNA898105 | 1993 | 423 | 1.834286 | 7.75902978 | Campylobacter | 194 | Bacteria | Bacteria | 771 | 0 | NTclustered | gi|1935888393|gb|CP049239.1| | 199 | g1793 | i0 | 99.527 | 132.09219858156 | 423 | 2 | 100 | 0 | 1 | 423 | 1035437 | 1035015 | Campylobacter concisus strain P3UCO1 chromosome, complete genome | blastn | 55875 | 771 | 1 | Bacteria | Pseudomonadati | Campylobacterota | Epsilonproteobacteria | Campylobacterales | Campylobacteraceae | Campylobacter | Campylobacter concisus | ||
| 18725271 | 18725271 | PRJNA898105_P_NODE_3255_length_324_cov_0.920319_g3055_i0 | PRJNA898105 | 3255 | 324 | 0.920319 | 2.98183356 | uncultured Arcobacter sp. | 165434 | Bacteria | Bacteria | 220 | 7.88e-53 | NTclustered | gi|682122801|gb|KJ739652.1| | 165434 | g3055 | i0 | 90.23 | 65.8734567901235 | 174 | 9 | 53 | 7 | 3 | 174 | 177 | 10 | Uncultured Arcobacter sp. clone ONWR3-May-27-2012 23S ribosomal RNA gene, partial sequence | blastn | 21343 | 220 | 1 | Bacteria | Pseudomonadati | Campylobacterota | Epsilonproteobacteria | Campylobacterales | Arcobacteraceae | Arcobacter | uncultured Arcobacter sp. | ||
| 20370547 | 20370547 | PRJNA898105_P_NODE_5176_length_269_cov_1.341837_g4976_i0 | PRJNA898105 | 5176 | 269 | 1.341837 | 3.60954153 | root | 1 | Root_unresolved | Root_unresolved | 497 | 2.63e-136 | NTclustered | gi|1935888393|gb|CP049239.1| | 199 | g4976 | i0 | 100 | 106 | 269 | 0 | 100 | 0 | 1 | 269 | 1035868 | 1036136 | Campylobacter concisus strain P3UCO1 chromosome, complete genome | blastn | 28514 | 497 | 1 | Bacteria | Pseudomonadati | Campylobacterota | Epsilonproteobacteria | Campylobacterales | Campylobacteraceae | Campylobacter | Campylobacter concisus | ||
| 27845275 | 27845275 | PRJNA898105_P_NODE_5144_length_270_cov_0.883249_g4944_i0 | PRJNA898105 | 5144 | 270 | 0.883249 | 2.3847723 | Helicobacter pylori | 210 | Bacteria | Bacteria | 71.6 | 1.66e-14 | NR | GAA8812112.1 | 210 | g4944 | i0 | 71.4 | 0.466666666666667 | 42 | 12 | 46.7 | 0 | 127 | 2 | 2 | 43 | GAA8812112.1 hypothetical protein Kyoto149A_3190 [Helicobacter pylori] | diamond | 126 | 71.6 | 1 | Bacteria | Pseudomonadati | Campylobacterota | Epsilonproteobacteria | Campylobacterales | Helicobacteraceae | Helicobacter | Helicobacter pylori |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;