RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA898105", tax_kingdom = "Pseudomonadati" and tax_phylum = "Abditibacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Abditibacteriota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA898105 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23825988 23825988 PRJNA898105_P_NODE_4779_length_276_cov_1.418719_g4579_i0 PRJNA898105 4779 276 1.418719 3.91566444 Abditibacteriota bacterium 2783868 Bacteria Bacteria 344 3.74e-90   NTclustered gi|2215576334|dbj|AP024152.1| 2783868 g4579 i0 89.455 300.170289855072 275 25 99 4 4 276 2851408 2851680 Abditibacteriota bacterium IAD-21 DNA, complete genome blastn 82847 344 1 Bacteria   Pseudomonadati Abditibacteriota         Abditibacteriota bacterium
27150120 27150120 PRJNA898105_P_NODE_5162_length_269_cov_1.571429_g4962_i0 PRJNA898105 5162 269 1.571429 4.22714401 Abditibacteriota bacterium 2783868 Bacteria Bacteria 68.9 2.78e-11   NR BCM91345.1 2783868 g4962 i0 75 0.535315985130111 48 11 52.4 1 102 242 349 396 BCM91345.1 hypothetical protein IAD21_03215 [Abditibacteriota bacterium] diamond 144 68.9 1 Bacteria   Pseudomonadati Abditibacteriota         Abditibacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;