RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA898105", tax_clade = "Sar" and tax_phylum = "Bacillariophyta"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA898105 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23826005 23826005 PRJNA898105_P_NODE_6399_length_250_cov_0.870056_g6199_i0 PRJNA898105 6399 250 0.870056 2.17514 Ulnaria acus 1436140 SAR_Eukaryotes SAR_Eukaryotes 462 8.83e-126   NTclustered gi|378824466|ref|NC_016731.1| 1436140 g6199 i0 100 195.96 250 0 100 0 1 250 67280 67031 Synedra acus chloroplast, complete genome blastn 48990 462 1 Eukaryota Sar   Bacillariophyta Fragilariophyceae Licmophorales Ulnariaceae Ulnaria Ulnaria acus
27537423 27537423 PRJNA898105_P_NODE_5043_length_271_cov_1.555556_g4843_i0 PRJNA898105 5043 271 1.555556 4.21555676 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 110 5.75e-26   NR CAJ1921532.1 2856 g4843 i0 64 3.04428044280443 89 31 97.4 1 269 6 873 961 CAJ1921532.1 unnamed protein product [Cylindrotheca closterium] diamond 825 110 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Cylindrotheca Cylindrotheca closterium
28161366 28161366 PRJNA898105_P_NODE_6325_length_250_cov_0.870056_g6125_i0 PRJNA898105 6325 250 0.870056 2.17514 Cylindrotheca closterium 2856 SAR_Eukaryotes SAR_Eukaryotes 70.5 5.9e-12   NR CAJ1962286.1 2856 g6125 i0 39.8 1.992 83 49 98.4 1 248 3 228 310 CAJ1962286.1 unnamed protein product [Cylindrotheca closterium] diamond 498 70.5 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Cylindrotheca Cylindrotheca closterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;