RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA898105", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 7 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 7 ✖

bioproject 1

  • PRJNA898105 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3424673 3424673 PRJNA898105_P_NODE_7563_length_245_cov_0.895349_g7363_i0 PRJNA898105 7563 245 0.895349 2.19360505 Prosthecobacter vanneervenii 48466 Bacteria Bacteria 425 1.1299999999999999e-114   NTclustered gi|12583975|gb|AF245379.1|AF245379 48466 g7363 i0 97.959 227.955102040816 245 5 100 0 1 245 532 776 Prosthecobacter sp. FC-2 23S ribosomal RNA gene, partial sequence blastn 55849 425 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter vanneervenii
26644053 26644053 PRJNA898105_P_NODE_6441_length_250_cov_0.870056_g6241_i0 PRJNA898105 6441 250 0.870056 2.17514 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 142 5.189999999999999e-37   NR HEY1173498.1 2499141 g6241 i0 91.6 2.976 83 7 99.6 0 249 1 809 891 HEY1173498.1 CusA/CzcA family heavy metal efflux RND transporter [Verrucomicrobiia bacterium] diamond 744 142 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
29802948 29802948 PRJNA898105_P_NODE_4651_length_278_cov_1.765854_g4451_i0 PRJNA898105 4651 278 1.765854 4.90907412 Prosthecobacter sp. 1965333 Bacteria Bacteria 111 3.5300000000000003e-26   NR MEQ1747971.1 1965333 g4451 i0 68.1 1.97482014388489 91 29 98.2 0 6 278 1591 1681 MEQ1747971.1 putative Ig domain-containing protein [Prosthecobacter sp.] diamond 549 111 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter sp.
30308986 30308986 PRJNA898105_P_NODE_6472_length_250_cov_0.870056_g6272_i0 PRJNA898105 6472 250 0.870056 2.17514 Chthoniobacteraceae bacterium 2811408 Bacteria Bacteria 148 1.5799999999999994e-42   NR MEO6784820.1 2811408 g6272 i0 91.6 0.996 83 7 99.6 0 1 249 33 115 MEO6784820.1 acetate/propionate family kinase [Chthoniobacteraceae bacterium] diamond 249 148 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae   Chthoniobacteraceae bacterium
31762421 31762421 PRJNA898105_P_NODE_4557_length_280_cov_1.410628_g4357_i0 PRJNA898105 4557 280 1.410628 3.9497584 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 56.6 7.46e-7   NR MES2735671.1 2026799 g4357 i0 35.7 1.52142857142857 70 44 75 1 55 264 381 449 MES2735671.1 Fic family protein [Verrucomicrobiota bacterium] diamond 426 56.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31888919 31888919 PRJNA898105_P_NODE_1917_length_433_cov_1.494444_g1717_i0 PRJNA898105 1917 433 1.494444 6.47094252 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 95.9 8.18e-20   NR MBS0645922.1 2026799 g1717 i0 38.2 5.96535796766744 144 83 98.4 3 6 431 842 981 MBS0645922.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 2583 95.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
32276613 32276613 PRJNA898105_P_NODE_5698_length_259_cov_1.424731_g5498_i0 PRJNA898105 5698 259 1.424731 3.69005329 Bacteria 2 Bacteria Bacteria 139 3.26e-37   NR HMP82642.1 2026799 g5498 i0 74.4 5.90733590733591 86 22 99.6 0 258 1 209 294 HMP82642.1 acyl-CoA reductase [Verrucomicrobiota bacterium] diamond 1530 140 0.992857142857143 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;