RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA897077", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 3 ✖

tax_kingdom 1

  • Pseudomonadati · 3 ✖

bioproject 1

  • PRJNA897077 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8526401 8526401 PRJNA897077_P_NODE_16047_length_251_cov_0.876404_g15920_i0 PRJNA897077 16047 251 0.876404 2.19977404 Desulfobacteraceae bacterium 2049433 Bacteria Bacteria 147 8.19e-42   NR MEE4608611.1 2049433 g15920 i0 89.2 0.99203187250996006 83 9 99.2 0 250 2 151 233 MEE4608611.1 sigma 54-interacting transcriptional regulator [Desulfobacteraceae bacterium] diamond 249 147 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae   Desulfobacteraceae bacterium
27593006 27593006 PRJNA897077_P_NODE_18904_length_244_cov_0.912281_g18777_i0 PRJNA897077 18904 244 0.912281 2.22596564 Desulfobacteraceae bacterium 2049433 Bacteria Bacteria 133 7.71e-36   NR PLX44456.1 2049433 g18777 i0 91.7 1.77049180327869 72 6 88.5 0 216 1 1 72 PLX44456.1 MAG: 3-oxoacyl-ACP synthase [Desulfobacteraceae bacterium] diamond 432 133 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae   Desulfobacteraceae bacterium
29613220 29613220 PRJNA897077_P_NODE_18950_length_244_cov_0.912281_g18823_i0 PRJNA897077 18950 244 0.912281 2.22596564 Desulfobacterales bacterium 2044940 Bacteria Bacteria 144 8.01e-41   NR MDF1590282.1 2044940 g18823 i0 87.5 0.983606557377049 80 10 98.4 0 243 4 14 93 MDF1590282.1 PHP-associated domain-containing protein [Desulfobacterales bacterium] diamond 240 144 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales     Desulfobacterales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;