RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA897077", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA897077 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29297868 29297868 PRJNA897077_P_NODE_18069_length_246_cov_0.901734_g17942_i0 PRJNA897077 18069 246 0.901734 2.21826564 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 121 6.74e-30   NR MES2769234.1 3034175 g17942 i0 74 0.939024390243902 77 20 93.9 0 14 244 208 284 MES2769234.1 DNA mismatch repair protein MutS [Bdellovibrionota bacterium] diamond 231 121 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
31793893 31793893 PRJNA897077_P_NODE_19057_length_244_cov_0.912281_g18930_i0 PRJNA897077 19057 244 0.912281 2.22596564 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 43.5 0.0204   NR MEW6055854.1 3034175 g18930 i0 31 0.872950819672131 71 46 83.6 2 35 238 525 595 MEW6055854.1 FecR family protein [Bdellovibrionota bacterium] diamond 213 43.5 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;