RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA897077", tax_clade = "Sar" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA897077 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23825738 23825738 PRJNA897077_P_NODE_15399_length_253_cov_0.866667_g15272_i0 PRJNA897077 15399 253 0.866667 2.19266751 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 207 4.63e-49   NTclustered gi|2795032822|ref|XM_067928242.1| 4785 g15272 i0 81.853 52.4901185770751 259 35 100 11 1 253 92 344 Phytophthora cinnamomi serine/threonine-protein phosphatase PP2A (IUM83_04186), partial mRNA blastn 13280 207 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
28516240 28516240 PRJNA897077_P_NODE_8607_length_335_cov_1.190840_g8480_i0 PRJNA897077 8607 335 1.19084 3.989314 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 120 9.3e-30   NR KAL0583256.1 65357 g8480 i0 57.7 16.889552238806 111 44 99.4 2 1 333 90 197 KAL0583256.1 hypothetical protein ABG067_006864 [Albugo candida] diamond 5658 120 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo candida
32647658 32647658 PRJNA897077_P_NODE_4240_length_470_cov_1.299748_g4113_i0 PRJNA897077 4240 470 1.299748 6.1088156 Hyaloperonospora brassicae 162125 SAR_Eukaryotes SAR_Eukaryotes 139 4.0399999999999996e-38   NR CAI5737574.1 162125 g4113 i0 43.1 17.8468085106383 160 87 99.6 3 469 2 34 193 CAI5737574.1 unnamed protein product [Hyaloperonospora brassicae] diamond 8388 139 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;