RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA897077", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 6 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 6 ✖

bioproject 1

  • PRJNA897077 · 6 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25470834 25470834 PRJNA897077_P_NODE_13100_length_274_cov_1.547264_g12973_i0 PRJNA897077 13100 274 1.547264 4.23950336 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 169 4.78e-47   NR NUQ12829.1 2026741 g12973 i0 91.1 0.985401459854015 90 8 98.5 0 272 3 556 645 NUQ12829.1 DNA topoisomerase (ATP-hydrolyzing) subunit B [Gemmatimonadaceae bacterium] diamond 270 169 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
27213562 27213562 PRJNA897077_P_NODE_12562_length_280_cov_1.280193_g12435_i0 PRJNA897077 12562 280 1.280193 3.5845404 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 76.3 1.68e-15   NR HEY3013408.1 2448054 g12435 i0 45.6 1.71428571428571 90 49 96.4 0 7 276 17 106 HEY3013408.1 tetratricopeptide repeat protein [Gemmatimonadales bacterium] diamond 480 76.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
27245345 27245345 PRJNA897077_P_NODE_16823_length_249_cov_0.886364_g16696_i0 PRJNA897077 16823 249 0.886364 2.20704636 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 94.7 1.99e-20   NR HEX5072692.1 2026741 g16696 i0 57.5 2.86746987951807 80 34 96.4 0 247 8 496 575 HEX5072692.1 DUF2723 domain-containing protein [Gemmatimonadaceae bacterium] diamond 714 94.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
31453990 31453990 PRJNA897077_P_NODE_17316_length_248_cov_0.891429_g17189_i0 PRJNA897077 17316 248 0.891429 2.21074392 Pseudomonadati 3379134 Bacteria Bacteria 94 9.18e-21   NR MBB27874.1 2026742 g17189 i0 68.2 2.39516129032258 66 21 79.8 0 198 1 1 66 MBB27874.1 hypothetical protein [Gemmatimonadota bacterium] diamond 594 94 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
32174020 32174020 PRJNA897077_P_NODE_19718_length_242_cov_0.923077_g19591_i0 PRJNA897077 19718 242 0.923077 2.23384634 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 102 3.06e-26   NR HJR66347.1 2026741 g19591 i0 96.4 0.681818181818182 55 2 68.2 0 241 77 34 88 HJR66347.1 DUF2277 domain-containing protein [Gemmatimonadaceae bacterium] diamond 165 102 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
32426948 32426948 PRJNA897077_P_NODE_18479_length_245_cov_0.906977_g18352_i0 PRJNA897077 18479 245 0.906977 2.22209365 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 107 1.6200000000000003e-27   NR HET9636793.1 2026741 g18352 i0 64.5 0.930612244897959 76 27 93.1 0 230 3 1 76 HET9636793.1 isoprenylcysteine carboxylmethyltransferase family protein [Gemmatimonadaceae bacterium] diamond 228 107 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;