RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA897077" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA897077 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
873757 873757 PRJNA897077_P_NODE_5161_length_428_cov_1.225352_g5034_i0 PRJNA897077 5161 428 1.225352 5.24450656 Polyschismium peyerimhoffii 2911783 Evosea other_Eukaryota 372 2.79e-98   NTclustered gi|2161226355|gb|MZ313553.1| 2911783 g5034 i0 83.105 37.5373831775701 438 44 97 26 12 427 6563 6992 Polyschismium peyerimhoffii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 16066 372 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Polyschismium Polyschismium peyerimhoffii
6348141 6348141 PRJNA897077_P_NODE_17065_length_249_cov_0.886364_g16938_i0 PRJNA897077 17065 249 0.886364 2.20704636 Eumycetozoa 142796 Evosea other_Eukaryota 128 3.64e-25   NTclustered gi|2250222272|gb|ON713376.1| 1334518 g16938 i0 92.308 36.6144578313253 91 6 36 1 132 221 1723 1633 Calomyxa metallica voucher MA82942 small subunit ribosomal RNA gene, partial sequence blastn 9117 128 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Trichiida Dianemataceae Calomyxa Calomyxa metallica
20000180 20000180 PRJNA897077_P_NODE_15856_length_252_cov_0.871508_g15729_i0 PRJNA897077 15856 252 0.871508 2.19620016 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 460 3.2e-125   NTclustered gi|300078498|gb|GU001160.1| 5755 g15729 i0 99.603 22.6269841269841 252 1 100 0 1 252 5406 5657 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 5702 460 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;