RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA896973" and tax_phylum = "Verrucomicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA896973 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3795905 3795905 PRJNA896973_P_NODE_13203_length_307_cov_2.602564_g13109_i0 PRJNA896973 13203 307 2.602564 7.98987148 Bacteria 2 Bacteria Bacteria 220 7.42e-53   NTclustered gi|2874254020|emb|OY970345.1| 412056 g13109 i0 80 207.42671009772 310 52 100 9 1 307 3894842 3894540 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04212.bin.2.122 genome assembly, chromosome: 1 blastn 63680 220 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
21275158 21275158 PRJNA896973_P_NODE_23537_length_248_cov_0.880000_g23443_i0 PRJNA896973 23537 248 0.88 2.1824 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 196 9.79e-46   NTclustered gi|2874253793|emb|OY969777.1| 412056 g23443 i0 83.028 0.879032258064516 218 36 88 1 32 248 1445754 1445537 MAG: uncultured Verrucomicrobiae bacterium isolate MFD01689.bin.c.1 genome assembly, chromosome: 1 blastn 218 196 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
26834316 26834316 PRJNA896973_P_NODE_20401_length_257_cov_2.114130_g20307_i0 PRJNA896973 20401 257 2.11413 5.4333141 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 42.7 0.042   NR MBI5768465.1 2026799 g20307 i0 34.3 0.817120622568093 70 46 81.7 0 46 255 146 215 MBI5768465.1 glycoside hydrolase family protein [Verrucomicrobiota bacterium] diamond 210 42.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
27094995 27094995 PRJNA896973_S_NODE_822_length_405_cov_4.382530_g808_i0 PRJNA896973 822 405 4.38253 17.7492465 Chthoniobacter 295577 Bacteria Bacteria 101 7.1400000000000005e-22   NR MDB6149795.1 2510640 g808 i0 74.1 1.19259259259259 54 14 40 0 27 188 95 148 MDB6149795.1 hypothetical protein [Chthoniobacter sp.] diamond 483 101 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae Chthoniobacter Chthoniobacter sp.
28263390 28263390 PRJNA896973_P_NODE_23086_length_249_cov_0.875000_g22992_i0 PRJNA896973 23086 249 0.875 2.17875 Bacteria 2 Bacteria Bacteria 48.9 9.16e-5   NR MEI9997826.1 2026799 g22992 i0 52 1.91566265060241 50 21 57.8 2 230 87 101 149 MEI9997826.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 477 48.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31414567 31414567 PRJNA896973_P_NODE_24276_length_247_cov_0.885057_g24182_i0 PRJNA896973 24276 247 0.885057 2.18609079 Candidatus Methylacidiphilales bacterium 2720631 Bacteria Bacteria 124 3.63e-31   NR MCE0523300.1 2720631 g24182 i0 72 1.9919028340081 82 23 99.6 0 246 1 140 221 MCE0523300.1 tetratricopeptide repeat protein [Candidatus Methylacidiphilales bacterium] diamond 492 124 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Methylacidiphilae Methylacidiphilales     Candidatus Methylacidiphilales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;