RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA896973" and tax_phylum = "Spirochaetota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA896973 · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7251283 7251283 PRJNA896973_P_NODE_20466_length_257_cov_1.451087_g20372_i0 PRJNA896973 20466 257 1.451087 3.72929359 Treponema vincentii 69710 Bacteria Bacteria 270 5.93e-68   NTclustered gi|2034589463|gb|CP050497.1| 69710 g20372 i0 88.991 2.61089494163424 218 24 85 0 40 257 2472229 2472446 Treponema vincentii strain OMZ 806 chromosome, complete genome blastn 671 270 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema vincentii
13997949 13997949 PRJNA896973_P_NODE_29151_length_211_cov_16.181159_g29057_i0 PRJNA896973 29151 211 16.181159 34.14224549 Spirochaetia 203692 Bacteria Bacteria 313 7.7e-81   NTclustered gi|468269|gb|L31543.1|BVNFSRR 34097 g29057 i0 93.365 108.483412322275 211 14 100 0 1 211 13 223 Brevinema andersonii (strain FS47) ribosomal RNA blastn 22890 315 0.993650793650794 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Brevinematales Brevinemataceae Brevinema Brevinema andersonii
17451302 17451302 PRJNA896973_P_NODE_18614_length_267_cov_8.077320_g18520_i0 PRJNA896973 18614 267 8.07732 21.5664444 Brevinematales bacterium NS 2979017 Bacteria Bacteria 243 1.3500000000000004e-59   NTclustered gi|2305034691|gb|CP053071.1| 2979017 g18520 i0 83.459 232.423220973783 266 39 99 4 4 267 667662 667924 Brevinematales bacterium NS chromosome, complete genome blastn 62057 243 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Brevinematales     Brevinematales bacterium NS
28318976 28318976 PRJNA896973_P_NODE_25806_length_244_cov_1.801170_g25712_i0 PRJNA896973 25806 244 1.80117 4.3948548 Spirochaetota bacterium 2202144 Bacteria Bacteria 140 1.28e-38   NR MDK2818532.1 2202144 g25712 i0 90 0.983606557377049 80 8 98.4 0 241 2 22 101 MDK2818532.1 flagellin [Spirochaetota bacterium] diamond 240 140 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium
29581633 29581633 PRJNA896973_P_NODE_11670_length_323_cov_1.636000_g11576_i0 PRJNA896973 11670 323 1.636 5.28428 Brevinema andersonii 34097 Bacteria Bacteria 160 2.74e-46   NR WP_092318482.1 34097 g11576 i0 77.6 1.98761609907121 107 24 99.4 0 323 3 180 286 WP_092318482.1 flagellin [Brevinema andersonii] diamond 642 160 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Brevinematales Brevinemataceae Brevinema Brevinema andersonii
30466770 30466770 PRJNA896973_P_NODE_7573_length_387_cov_2.372611_g7479_i0 PRJNA896973 7573 387 2.372611 9.18200457 Treponema sp. 166 Bacteria Bacteria 45.8 0.00915   NR MCL2374892.1 166 g7479 i0 35.8 1.52713178294574 67 37 48.8 2 282 94 66 130 MCL2374892.1 DUF4338 domain-containing protein [Treponema sp.] diamond 591 45.8 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;