RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA896973" and tax_phylum = "Platyhelminthes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA896973 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2148490 2148490 PRJNA896973_P_NODE_21162_length_253_cov_1.711111_g21068_i0 PRJNA896973 21162 253 1.711111 4.32911083 Stenostomum leucops 52061 Platyhelminthes Platyhelminthes 457 4.16e-124   NTclustered gi|28273263|gb|AY157151.1| 52061 g21068 i0 99.209 41.0909090909091 253 2 100 0 1 253 2100 1848 Stenostomum leucops 28S large subunit ribosomal RNA gene, partial sequence blastn 10396 457 1 Eukaryota Opisthokonta Metazoa Platyhelminthes     Stenostomidae Stenostomum Stenostomum leucops
19999555 19999555 PRJNA896973_P_NODE_12036_length_319_cov_1.678862_g11942_i0 PRJNA896973 12036 319 1.678862 5.35556978 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 414 3.31e-111   NTclustered gi|1124902734|gb|AY812498.2| 6182 g11942 i0 99.134 72.871473354232 231 1 72 1 35 265 1086 1315 Schistosoma japonicum SJCHGC01615 protein mRNA, partial cds blastn 23246 418 0.990430622009569 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
32110525 32110525 PRJNA896973_P_NODE_6138_length_426_cov_0.787535_g6044_i0 PRJNA896973 6138 426 0.787535 3.3548991 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 104 4.02e-25   NR AAX25032.2 6182 g6044 i0 86.5 0.366197183098592 52 7 36.6 0 102 257 104 155 AAX25032.2 SJCHGC04714 protein, partial [Schistosoma japonicum] diamond 156 104 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;