RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA896973" and tax_phylum = "Peploviricota"

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tax_superkingdom 1

tax_phylum 1

  • Peploviricota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA896973 · 6 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5072090 5072090 PRJNA896973_P_NODE_23944_length_247_cov_1.770115_g23850_i0 PRJNA896973 23944 247 1.770115 4.37218405 Lymphocryptovirus 10375 Viruses Viruses 457 4.05e-124   NTclustered gi|747017565|dbj|AB850658.1| 10376 g23850 i0 100 131.931174089069 247 0 100 0 1 247 40275 40521 Human herpesvirus 4 DNA, complete genome, strain: HN17 blastn 32587 457 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Lymphocryptovirus Lymphocryptovirus humangamma4
9801168 9801168 PRJNA896973_P_NODE_2888_length_588_cov_3.320388_g2797_i0 PRJNA896973 2888 588 3.320388 19.52388144 Lymphocryptovirus humangamma4 3050299 Viruses Viruses 1081 0   NTclustered gi|2086089260|gb|MT648656.1| 10376 g2797 i0 99.83 260.816326530612 588 1 100 0 1 588 38086 38673 Human gammaherpesvirus 4 isolate Necker-15, partial genome blastn 153360 1081 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Lymphocryptovirus Lymphocryptovirus humangamma4
18724439 18724439 PRJNA896973_P_NODE_12935_length_310_cov_1.624473_g12841_i0 PRJNA896973 12935 310 1.624473 5.0358663 Lymphocryptovirus humangamma4 3050299 Viruses Viruses 573 4.999999999999998e-159   NTclustered gi|1465382793|emb|LS992257.1| 10376 g12841 i0 100 100 310 0 100 0 1 310 166672 166363 Human gammaherpesvirus 4 isolate Human herpesvirus 4 genome assembly, chromosome: I blastn 31000 573 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Lymphocryptovirus Lymphocryptovirus humangamma4
21646212 21646212 PRJNA896973_P_NODE_5697_length_440_cov_2.002725_g5603_i0 PRJNA896973 5697 440 2.002725 8.81199 root 1 Root_unresolved Root_unresolved 813 0   NTclustered gi|1465382793|emb|LS992257.1| 10376 g5603 i0 100 104.363636363636 440 0 100 0 1 440 167779 167340 Human gammaherpesvirus 4 isolate Human herpesvirus 4 genome assembly, chromosome: I blastn 45920 813 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Lymphocryptovirus Lymphocryptovirus humangamma4
22921605 22921605 PRJNA896973_P_NODE_13058_length_309_cov_1.305085_g12964_i0 PRJNA896973 13058 309 1.305085 4.03271265 root 1 Root_unresolved Root_unresolved 571 1.7899999999999995e-158   NTclustered gi|2294362236|gb|ON596498.1| 10376 g12964 i0 100 100 309 0 100 0 1 309 925 617 Human gammaherpesvirus 4 isolate CHLBR07 latent membrane protein LMP-1 (LMP1) gene, partial cds blastn 30900 571 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Lymphocryptovirus Lymphocryptovirus humangamma4
24195561 24195561 PRJNA896973_P_NODE_25499_length_245_cov_0.895349_g25405_i0 PRJNA896973 25499 245 0.895349 2.19360505 Lymphocryptovirus 10375 Viruses Viruses 453 5.1900000000000006e-123   NTclustered gi|1519305892|dbj|AP019128.1| 10376 g25405 i0 100 186.048979591837 245 0 100 0 1 245 41283 41039 Human gammaherpesvirus 4 UPN326_PBMC DNA, nearly complete genome blastn 45582 453 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Lymphocryptovirus Lymphocryptovirus humangamma4

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;