RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where bioproject = "PRJNA896973" and tax_phylum = "Mucoromycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Mucoromycota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA896973 · 6 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3795975 3795975 PRJNA896973_P_NODE_9783_length_347_cov_5.394161_g9689_i0 PRJNA896973 9783 347 5.394161 18.71773867 Mucor 4830 Fungi Fungi 634 2.5599999999999996e-177   NTclustered gi|358001175|gb|JN938898.1| 4841 g9689 i0 99.712 99.7665706051873 347 0 100 1 1 347 332 677 Mucor racemosus strain DAOM 229663 28S ribosomal RNA (LSU) gene, partial sequence blastn 34619 634 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Mucoraceae Mucor Mucor racemosus
15271938 15271938 PRJNA896973_P_NODE_28232_length_241_cov_0.916667_g28138_i0 PRJNA896973 28232 241 0.916667 2.20916747 Mucorales 4827 Fungi Fungi 446 8.519999999999999e-121   NTclustered gi|909719411|gb|KR809877.1| 29924 g28138 i0 100 128.149377593361 241 0 100 0 1 241 2627 2387 Mucor circinelloides f. lusitanicus strain CBS 277.49 mitochondrion, complete genome blastn 30884 446 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Mucoraceae Mucor Mucor lusitanicus
15271951 15271951 PRJNA896973_P_NODE_6952_length_402_cov_2.285714_g6858_i0 PRJNA896973 6952 402 2.285714 9.18857028 Funneliformis 1117308 Fungi Fungi 737 0   NTclustered gi|13172425|gb|AF304983.1| 27381 g6858 i0 99.751 99.9850746268657 402 1 100 0 1 402 437 36 Glomus mosseae isolate BEG25 large subunit ribosomal RNA gene, partial sequence blastn 40194 739 0.997293640054127 Eukaryota Opisthokonta Fungi Mucoromycota Glomeromycetes Glomerales Glomeraceae Funneliformis Funneliformis mosseae
16175729 16175729 PRJNA896973_P_NODE_12593_length_313_cov_5.608333_g12499_i0 PRJNA896973 12593 313 5.608333 17.55408229 Mucor racemosus 4841 Fungi Fungi 560 3.93e-155   NTclustered gi|225134681|gb|FJ345353.1| 4841 g12499 i0 99.042 56.1150159744409 313 2 100 1 1 313 2205 2516 Mucor racemosus strain ATCC 42647 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 17564 560 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Mucoraceae Mucor Mucor racemosus
17451134 17451134 PRJNA896973_P_NODE_10354_length_339_cov_27.398496_g10260_i0 PRJNA896973 10354 339 27.398496 92.88090144 Radiomyces spectabilis 64574 Fungi Fungi 154 8.53e-33   NTclustered gi|2323709042|ref|XM_051563602.1| 64574 g10260 i0 88.372 2.47787610619469 129 13 38 2 176 303 128 1 Radiomyces spectabilis ribosomal L29e protein family-domain-containing protein (BYT42DRAFT_475122), partial mRNA blastn 840 154 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Radiomycetaceae Radiomyces Radiomyces spectabilis
25099484 25099484 PRJNA896973_S_NODE_2220_length_266_cov_4.056995_g2206_i0 PRJNA896973 2220 266 4.056995 10.791606700000001 Mucor racemosus 4841 Fungi Fungi 398 2.7099999999999996e-106   NTclustered gi|158562442|gb|EU195422.1| 4841 g2206 i0 98.253 42.2781954887218 229 0 85 3 1 226 899 1126 Mucor racemosus strain PTCC 5305 clone PM43 28S ribosomal RNA, partial sequence blastn 11246 398 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Mucoraceae Mucor Mucor racemosus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;