RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA896973", tax_phylum = "Mollusca" and tax_superkingdom = "Eukaryota"

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tax_superkingdom 1

  • Eukaryota · 2 ✖

tax_phylum 1

  • Mollusca · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA896973 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10172628 10172628 PRJNA896973_P_NODE_9048_length_359_cov_1.884615_g8954_i0 PRJNA896973 9048 359 1.884615 6.76576785 Metazoa 33208 Mollusca Mollusca 664 0   NTclustered gi|1928112764|gb|MT947788.1| 6523 g8954 i0 100 99.8022284122563 359 0 100 0 1 359 1022 1380 Lymnaea stagnalis isolate Lsta_434075 hypothetical protein mRNA, complete cds blastn 35829 664 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Lymnaeidae Lymnaea Lymnaea stagnalis
22550124 22550124 PRJNA896973_P_NODE_25758_length_244_cov_2.438596_g25664_i0 PRJNA896973 25758 244 2.438596 5.95017424 Aplysia californica 6500 Mollusca Mollusca 433 6.73e-117   NTclustered gi|407971003|ref|NM_001204549.1| 6500 g25664 i0 99.167 0.983606557377049 240 2 98 0 1 240 954 1193 Aplysia californica R3-14 neuropeptide (LOC100533236), mRNA blastn 240 433 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Aplysiida Aplysiidae Aplysia Aplysia californica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;