RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA896973" and tax_phylum = "Fusobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Fusobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA896973 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3795947 3795947 PRJNA896973_P_NODE_26543_length_243_cov_1.005882_g26449_i0 PRJNA896973 26543 243 1.005882 2.44429326 Leptotrichia 32067 Bacteria Bacteria 427 3.11e-115   NTclustered gi|290759860|gb|GU561361.1| 40542 g26449 i0 98.354 108.037037037037 243 4 100 0 1 243 1067 1309 Leptotrichia buccalis strain GEJ9 16S ribosomal RNA gene, partial sequence blastn 26253 427 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia buccalis
4702023 4702023 PRJNA896973_S_NODE_1064_length_359_cov_3.765734_g1050_i0 PRJNA896973 1064 359 3.765734 13.51898506 Fusobacterium nucleatum 851 Bacteria Bacteria 204 8.869999999999999e-48   NTclustered gi|2444100754|gb|CP117525.1| 851 g1050 i0 83.962 5.30640668523677 212 34 59 0 131 342 1642796 1643007 Fusobacterium nucleatum strain FNV chromosome, complete genome blastn 1905 204 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
7622028 7622028 PRJNA896973_P_NODE_15226_length_290_cov_1.064516_g15132_i0 PRJNA896973 15226 290 1.064516 3.0870964 Fusobacterium 848 Bacteria Bacteria 536 6.079999999999999e-148   NTclustered gi|1370537877|gb|CP028108.1| 860 g15132 i0 100 476.11724137931 290 0 100 0 1 290 462608 462319 Fusobacterium periodonticum strain 2_1_31 chromosome, complete genome blastn 138074 536 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium periodonticum
25470697 25470697 PRJNA896973_P_NODE_10620_length_336_cov_1.889734_g10526_i0 PRJNA896973 10620 336 1.889734 6.34950624 root 1 Root_unresolved Root_unresolved 599 9.029999999999998e-167   NTclustered gi|631253196|ref|NR_114394.1| 40542 g10526 i0 98.81 100 336 4 100 0 1 336 846 511 Leptotrichia buccalis strain C-1013-b 16S ribosomal RNA, partial sequence blastn 33600 604 0.991721854304636 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia buccalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;