RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA896973" and tax_phylum = "Campylobacterota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA896973 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1243944 1243944 PRJNA896973_P_NODE_12261_length_317_cov_1.143443_g12167_i0 PRJNA896973 12261 317 1.143443 3.62471431 Campylobacter 194 Bacteria Bacteria 580 3.0599999999999993e-161   NTclustered gi|930358546|gb|CP012541.1| 199 g12167 i0 99.685 217.624605678233 317 1 100 0 1 317 1113327 1113643 Campylobacter concisus strain ATCC 33237 chromosome, complete genome blastn 68987 580 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter concisus
20370353 20370353 PRJNA896973_P_NODE_27836_length_241_cov_1.130952_g27742_i0 PRJNA896973 27836 241 1.130952 2.72559432 Campylobacter 194 Bacteria Bacteria 446 8.519999999999999e-121   NTclustered gi|1935888393|gb|CP049239.1| 199 g27742 i0 100 235.078838174274 241 0 100 0 1 241 1033109 1032869 Campylobacter concisus strain P3UCO1 chromosome, complete genome blastn 56654 446 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter concisus
26644032 26644032 PRJNA896973_S_NODE_821_length_405_cov_5.945783_g807_i0 PRJNA896973 821 405 5.945783 24.08042115 Helicobacter pylori 210 Bacteria Bacteria 53.9 1.27e-6   NR GAA9124962.1 210 g807 i0 100 0.162962962962963 22 0 16.3 0 405 340 15 36 GAA9124962.1 hypothetical protein Kyoto190A_0650 [Helicobacter pylori] diamond 66 53.9 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
28382172 28382172 PRJNA896973_P_NODE_20626_length_256_cov_1.622951_g20532_i0 PRJNA896973 20626 256 1.622951 4.15475456 Helicobacter pylori 210 Bacteria Bacteria 47.8 5.52e-5   NR GAA9247093.1 210 g20532 i0 87.5 0.375 32 4 37.5 0 148 243 34 65 GAA9247093.1 hypothetical protein Kyoto199A_0970 [Helicobacter pylori] diamond 96 47.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;