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contig_metadata

36 rows where bioproject = "PRJNA896973" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 36 ✖

tax_kingdom 1

bioproject 1

  • PRJNA896973 · 36 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1244066 1244066 PRJNA896973_S_NODE_461_length_551_cov_3.403766_g447_i0 PRJNA896973 461 551 3.403766 18.75475066 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 180 1.19e-53   NR HEY8279968.1 3034175 g447 i0 72.6 0.61524500907441 113 31 61.5 0 355 17 1 113 HEY8279968.1 uracil-DNA glycosylase [Bdellovibrionota bacterium] diamond 339 180 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
8526243 8526243 PRJNA896973_S_NODE_147_length_1017_cov_4.829449_g141_i0 PRJNA896973 147 1017 4.829449 49.11549633 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 440 5.65e-147   NR HEY8279780.1 3034175 g141 i0 89.4 0.722713864306785 245 26 72.3 0 735 1 17 261 HEY8279780.1 excinuclease ABC subunit UvrB [Bdellovibrionota bacterium] diamond 735 440 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
8526269 8526269 PRJNA896973_S_NODE_67_length_1428_cov_3.957934_g64_i0 PRJNA896973 67 1428 3.957934 56.51929752 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 503 1.7599999999999998e-174   NR HEY8279530.1 3034175 g64 i0 93.2 0.552521008403361 263 18 55.3 0 789 1 1 263 HEY8279530.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha [Bdellovibrionota bacterium] diamond 789 503 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
11076993 11076993 PRJNA896973_S_NODE_609_length_471_cov_4.904523_g595_i0 PRJNA896973 609 471 4.904523 23.10030333 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 170 1.87e-50   NR MER2519215.1 2053517 g595 i0 91.4 0.515923566878981 81 7 51.6 0 6 248 127 207 MER2519215.1 ubiquinol-cytochrome c reductase iron-sulfur subunit [Bdellovibrionales bacterium] diamond 243 170 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
14901467 14901467 PRJNA896973_S_NODE_652_length_456_cov_3.099217_g638_i0 PRJNA896973 652 456 3.099217 14.13242952 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 236 9.43e-75   NR HEY8278488.1 3034175 g638 i0 78.2 0.967105263157895 147 32 96.7 0 1 441 100 246 HEY8278488.1 D-alanine--D-alanine ligase family protein [Bdellovibrionota bacterium] diamond 441 236 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
17451657 17451657 PRJNA896973_S_NODE_434_length_572_cov_3.945892_g420_i0 PRJNA896973 434 572 3.945892 22.57050224 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 280 1.37e-83   NR MBS1962378.1 2053517 g420 i0 83.2 0.907342657342657 173 27 89.7 1 514 2 1160 1332 MBS1962378.1 HAMP domain-containing protein [Bdellovibrionales bacterium] diamond 519 280 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
20000054 20000054 PRJNA896973_S_NODE_356_length_641_cov_9.042254_g343_i0 PRJNA896973 356 641 9.042254 57.96084814 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 360 8.159999999999998e-118   NR HEY8280208.1 3034175 g343 i0 83.9 0.898595943837754 192 31 89.9 0 42 617 329 520 HEY8280208.1 M3 family metallopeptidase [Bdellovibrionota bacterium] diamond 576 360 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
20370418 20370418 PRJNA896973_S_NODE_636_length_461_cov_3.600515_g622_i0 PRJNA896973 636 461 3.600515 16.59837415 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 177 2.45e-51   NR HEY8279530.1 3034175 g622 i0 81 0.650759219088937 100 19 65.1 0 3 302 251 350 HEY8279530.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha [Bdellovibrionota bacterium] diamond 300 177 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
22921723 22921723 PRJNA896973_S_NODE_738_length_426_cov_4.603399_g724_i0 PRJNA896973 738 426 4.603399 19.61047974 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 231 1.17e-72   NR HEY8278394.1 3034175 g724 i0 80.9 0.957746478873239 136 26 95.8 0 10 417 17 152 HEY8278394.1 rod shape-determining protein RodA [Bdellovibrionota bacterium] diamond 408 231 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
26897646 26897646 PRJNA896973_S_NODE_1061_length_360_cov_1.142857_g1047_i0 PRJNA896973 1061 360 1.142857 4.1142852 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 200 2.31e-57   NR HEY8279980.1 3034175 g1047 i0 85.3 0.966666666666667 116 17 96.7 0 9 356 649 764 HEY8279980.1 ribonuclease R [Bdellovibrionota bacterium] diamond 348 200 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
26960627 26960627 PRJNA896973_S_NODE_2142_length_270_cov_6.076142_g2128_i0 PRJNA896973 2142 270 6.076142 16.4055834 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 96.3 7.460000000000001e-21   NR HEY8280479.1 3034175 g2128 i0 92.5 0.588888888888889 53 4 58.9 0 248 90 551 603 HEY8280479.1 30S ribosomal protein S1 [Bdellovibrionota bacterium] diamond 159 96.3 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
27024041 27024041 PRJNA896973_S_NODE_142_length_1025_cov_3.425420_g136_i0 PRJNA896973 142 1025 3.42542 35.110555 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 289 1.7099999999999997e-93   NR HEY8279776.1 3034175 g136 i0 84.5 0.491707317073171 168 26 49.2 0 509 1012 1 168 HEY8279776.1 flagellar motor protein [Bdellovibrionota bacterium] diamond 504 289 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
27656132 27656132 PRJNA896973_S_NODE_424_length_581_cov_4.265748_g410_i0 PRJNA896973 424 581 4.265748 24.78399588 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 49.3 0.00346   NR HEY8280442.1 3034175 g410 i0 37.7 0.397590361445783 77 46 38.7 1 573 349 279 355 HEY8280442.1 hypothetical protein [Bdellovibrionota bacterium] diamond 231 49.3 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
27908268 27908268 PRJNA896973_S_NODE_2685_length_247_cov_1.764368_g2671_i0 PRJNA896973 2685 247 1.764368 4.35798896 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 153 2.13e-44   NR HEY8279115.1 3034175 g2671 i0 88.9 0.983805668016194 81 9 98.4 0 3 245 6 86 HEY8279115.1 GYF domain-containing protein [Bdellovibrionota bacterium] diamond 243 153 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
28318979 28318979 PRJNA896973_S_NODE_1886_length_286_cov_1.464789_g1872_i0 PRJNA896973 1886 286 1.464789 4.18929654 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 94 3.23e-20   NR MFN9066465.1 2053517 g1872 i0 73.6 0.555944055944056 53 14 55.6 0 161 3 280 332 MFN9066465.1 tyrosine-type recombinase/integrase [Bdellovibrionales bacterium] diamond 159 94 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
28318980 28318980 PRJNA896973_S_NODE_886_length_389_cov_1.205696_g872_i0 PRJNA896973 886 389 1.205696 4.69015744 Bacteriovorax sp. 2608087 Bacteria Bacteria 171 1.4599999999999998e-48   NR MBC7712824.1 2608087 g872 i0 63.3 0.925449871465296 120 44 92.5 0 2 361 245 364 MBC7712824.1 ThiF family adenylyltransferase [Bacteriovorax sp.] diamond 360 171 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax sp.
28350553 28350553 PRJNA896973_S_NODE_906_length_385_cov_3.455128_g892_i0 PRJNA896973 906 385 3.455128 13.3022428 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 92.8 2.08e-19   NR HEY8279779.1 3034175 g892 i0 52.2 0.716883116883117 92 42 71.7 2 2 277 270 359 HEY8279779.1 methyltransferase domain-containing protein [Bdellovibrionota bacterium] diamond 276 92.8 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
28476921 28476921 PRJNA896973_S_NODE_2746_length_246_cov_0.890173_g2732_i0 PRJNA896973 2746 246 0.890173 2.18982558 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 87.8 5.24e-18   NR HEY8280790.1 3034175 g2732 i0 70.7 0.707317073170732 58 17 70.7 0 71 244 282 339 HEY8280790.1 ankyrin repeat domain-containing protein [Bdellovibrionota bacterium] diamond 174 87.8 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
28508516 28508516 PRJNA896973_S_NODE_407_length_594_cov_2.247601_g393_i0 PRJNA896973 407 594 2.247601 13.35074994 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 89 4.99e-18   NR HEY8280536.1 3034175 g393 i0 66.1 0.313131313131313 62 21 31.3 0 12 197 150 211 HEY8280536.1 MBL fold metallo-hydrolase [Bdellovibrionota bacterium] diamond 186 89 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
28800096 28800096 PRJNA896973_S_NODE_167_length_957_cov_6.868778_g159_i0 PRJNA896973 167 957 6.868778 65.73420546 Bdellovibrio 958 Bacteria Bacteria 306 1.7399999999999995e-98   NR WP_331340499.1 28201 g159 i0 60.4 2.21003134796238 235 93 73.7 0 52 756 166 400 WP_331340499.1 hypothetical protein [Bdellovibrio sp.] diamond 2115 306 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp.
28950725 28950725 PRJNA896973_S_NODE_288_length_732_cov_4.174507_g276_i0 PRJNA896973 288 732 4.174507 30.55739124 Oligoflexia bacterium 2599941 Bacteria Bacteria 194 1.9199999999999999e-53   NR MCO5143631.1 2599941 g276 i0 48.7 1.63934426229508 197 96 80.7 2 706 116 98 289 MCO5143631.1 ATP-binding protein [Oligoflexia bacterium] diamond 1200 194 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia       Oligoflexia bacterium
30055555 30055555 PRJNA896973_S_NODE_2471_length_255_cov_1.928571_g2457_i0 PRJNA896973 2471 255 1.928571 4.91785605 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 66.2 1.07e-10   NR HEY8270415.1 2026715 g2457 i0 44.4 0.847058823529412 72 40 84.7 0 23 238 51 122 HEY8270415.1 hypothetical protein [Pseudobdellovibrionaceae bacterium] diamond 216 66.2 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
30087233 30087233 PRJNA896973_S_NODE_812_length_407_cov_5.308383_g798_i0 PRJNA896973 812 407 5.308383 21.60511881 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 201 1.88e-61   NR HEY8278488.1 3034175 g798 i0 79.2 0.884520884520885 120 25 88.5 0 361 2 3 122 HEY8278488.1 D-alanine--D-alanine ligase family protein [Bdellovibrionota bacterium] diamond 360 201 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
30340630 30340630 PRJNA896973_S_NODE_1152_length_348_cov_1.898182_g1138_i0 PRJNA896973 1152 348 1.898182 6.60567336 Bdellovibrio sp. 28201 Bacteria Bacteria 140 9.36e-39   NR WP_347359507.1 28201 g1138 i0 88.8 0.689655172413793 80 9 69 0 257 18 1 80 WP_347359507.1 ParA family protein [Bdellovibrio sp.] diamond 240 140 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp.
30340631 30340631 PRJNA896973_S_NODE_172_length_940_cov_4.002307_g164_i0 PRJNA896973 172 940 4.002307 37.6216858 Bdellovibrio reynosensis 2835041 Bacteria Bacteria 97.4 1.17e-18   NR WP_243540048.1 2835041 g164 i0 33.1 1.54787234042553 163 108 51.7 1 253 738 277 439 WP_243540048.1 TolC family protein [Bdellovibrio reynosensis] diamond 1455 97.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio reynosensis
31351395 31351395 PRJNA896973_S_NODE_36_length_1699_cov_4.252153_g34_i0 PRJNA896973 36 1699 4.252153 72.24407947 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 482 1.71e-162   NR HEY8279175.1 3034175 g34 i0 60.8 0.639199529134785 362 139 63.9 2 593 1678 16 374 HEY8279175.1 hypothetical protein [Bdellovibrionota bacterium] diamond 1086 482 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
31383038 31383038 PRJNA896973_S_NODE_316_length_693_cov_2.333871_g303_i0 PRJNA896973 316 693 2.333871 16.17372603 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 278 2.14e-89   NR HEY8279779.1 3034175 g303 i0 58.4 1.03030303030303 238 90 99.1 1 687 1 46 283 HEY8279779.1 methyltransferase domain-containing protein [Bdellovibrionota bacterium] diamond 714 278 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
31509603 31509603 PRJNA896973_S_NODE_416_length_585_cov_5.117188_g402_i0 PRJNA896973 416 585 5.117188 29.9355498 Bdellovibrio sp. 28201 Bacteria Bacteria 47 0.00517   NR HWU44655.1 28201 g402 i0 26.8 0.651282051282051 127 86 62.1 3 3 365 7 132 HWU44655.1 hypothetical protein [Bdellovibrio sp.] diamond 381 47 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp.
31667499 31667499 PRJNA896973_S_NODE_517_length_517_cov_6.087838_g503_i0 PRJNA896973 517 517 6.087838 31.47412246 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 129 1.41e-33   NR HEY8279324.1 3034175 g503 i0 74.7 0.504835589941973 87 22 50.5 0 333 73 1 87 HEY8279324.1 outer membrane protein assembly factor BamD [Bdellovibrionota bacterium] diamond 261 129 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
31857272 31857272 PRJNA896973_S_NODE_777_length_417_cov_0.997093_g763_i0 PRJNA896973 777 417 0.997093 4.15787781 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 102 5.84e-25   NR MCB0366811.1 2053517 g763 i0 51.5 0.741007194244604 103 48 72.7 1 416 114 12 114 MCB0366811.1 arsenate reductase (glutaredoxin) [Bdellovibrionales bacterium] diamond 309 102 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
32300702 32300702 PRJNA896973_S_NODE_279_length_748_cov_2.016296_g267_i0 PRJNA896973 279 748 2.016296 15.08189408 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 189 5.609999999999999e-55   NR HEY8278471.1 3034175 g267 i0 60.1 0.693850267379679 173 67 68.6 1 31 543 156 328 HEY8278471.1 hypothetical protein [Bdellovibrionota bacterium] diamond 519 189 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
32363842 32363842 PRJNA896973_S_NODE_339_length_666_cov_6.087690_g326_i0 PRJNA896973 339 666 6.08769 40.5440154 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 335 1.2999999999999997e-113   NR HEY8278302.1 3034175 g326 i0 86.2 0.846846846846847 188 26 84.7 0 588 25 1 188 HEY8278302.1 PBECR2 nuclease fold domain-containing protein [Bdellovibrionota bacterium] diamond 564 335 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
32426937 32426937 PRJNA896973_S_NODE_759_length_422_cov_1.578797_g745_i0 PRJNA896973 759 422 1.578797 6.66252334 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 75.9 8.7e-14   NR HEY8278131.1 3034175 g745 i0 77.1 0.341232227488152 48 10 34.1 1 421 278 162 208 HEY8278131.1 hypothetical protein [Bdellovibrionota bacterium] diamond 144 75.9 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
32490380 32490380 PRJNA896973_S_NODE_139_length_1040_cov_4.206825_g133_i0 PRJNA896973 139 1040 4.206825 43.75098 Bdellovibrionia bacterium 3034169 Bacteria Bacteria 50.1 0.00719   NR MEQ1878749.1 3034169 g133 i0 39.3 0.175961538461538 61 36 17.6 1 829 647 59 118 MEQ1878749.1 hypothetical protein [Bdellovibrionia bacterium] diamond 183 50.1 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia       Bdellovibrionia bacterium
32836828 32836828 PRJNA896973_S_NODE_2300_length_263_cov_1.731579_g2286_i0 PRJNA896973 2300 263 1.731579 4.55405277 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 54.7 2.79e-6   NR MBK9037822.1 2053517 g2286 i0 55.3 1.0722433460076 47 20 53.6 1 143 3 43 88 MBK9037822.1 hypothetical protein [Bdellovibrionales bacterium] diamond 282 54.7 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
32899747 32899747 PRJNA896973_S_NODE_200_length_885_cov_2.412562_g191_i0 PRJNA896973 200 885 2.412562 21.3511737 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 234 1.11e-72   NR HEY8280009.1 3034175 g191 i0 65.7 0.583050847457627 172 58 58.3 1 363 878 7 177 HEY8280009.1 M48 family metalloprotease [Bdellovibrionota bacterium] diamond 516 234 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;