RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA896973", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 3 ✖

tax_kingdom 1

  • Pseudomonadati · 3 ✖

bioproject 1

  • PRJNA896973 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16546536 16546536 PRJNA896973_P_NODE_25773_length_244_cov_2.169591_g25679_i0 PRJNA896973 25773 244 2.169591 5.29380204 Pseudomonadati 3379134 Bacteria Bacteria 339 1.51e-88   NTclustered gi|2304895958|gb|CP092109.1| 2847045 g25679 i0 91.77 213.80737704918 243 20 99 0 1 243 4077080 4077322 Geoalkalibacter halelectricus strain SAP-1 chromosome blastn 52169 339 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Geoalkalibacteraceae Geoalkalibacter Geoalkalibacter halelectricus
30435165 30435165 PRJNA896973_P_NODE_25513_length_245_cov_0.895349_g25419_i0 PRJNA896973 25513 245 0.895349 2.19360505 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 108 8.73e-27   NR HEX7127508.1 2202153 g25419 i0 63.6 0.942857142857143 77 28 94.3 0 244 14 82 158 HEX7127508.1 MaoC/PaaZ C-terminal domain-containing protein [Thermodesulfobacteriota bacterium] diamond 231 108 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
32237428 32237428 PRJNA896973_P_NODE_18778_length_266_cov_2.326425_g18684_i0 PRJNA896973 18778 266 2.326425 6.1882905 Syntrophorhabdales bacterium 2819264 Bacteria Bacteria 152 4.1999999999999985e-43   NR HUJ70067.1 2819264 g18684 i0 79.5 0.992481203007519 88 18 99.2 0 2 265 125 212 HUJ70067.1 SMP-30/gluconolactonase/LRE family protein [Syntrophorhabdales bacterium] diamond 264 152 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophorhabdia Syntrophorhabdales     Syntrophorhabdales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;