RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA896973", tax_kingdom = "Bacillati" and tax_phylum = "Armatimonadota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 2 ✖

tax_kingdom 1

  • Bacillati · 2 ✖

bioproject 1

  • PRJNA896973 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5976802 5976802 PRJNA896973_S_NODE_85_length_1284_cov_4.683732_g81_i0 PRJNA896973 85 1284 4.683732 60.13911888 Armatimonadetes bacterium CG_4_1 2033014 Bacteria Bacteria 473 2.0199999999999994e-160   NR PIY44557.1 1973909 g81 i0 99.6 0.633177570093458 271 1 63.3 0 1284 472 280 550 PIY44557.1 MAG: hypothetical protein COZ05_07900 [Armatimonadetes bacterium CG_4_10_14_3_um_filter_59_10] diamond 813 473 1 Bacteria   Bacillati Armatimonadota         Armatimonadetes bacterium CG_4_10_14_3_um_filter_59_10
26866162 26866162 PRJNA896973_S_NODE_1021_length_366_cov_1.723549_g1007_i0 PRJNA896973 1021 366 1.723549 6.30818934 Armatimonadetes bacterium CG_4_1 2033014 Bacteria Bacteria 230 1.92e-70   NR PIY44557.1 1973909 g1007 i0 100 0.991803278688525 121 0 99.2 0 3 365 163 283 PIY44557.1 MAG: hypothetical protein COZ05_07900 [Armatimonadetes bacterium CG_4_10_14_3_um_filter_59_10] diamond 363 230 1 Bacteria   Bacillati Armatimonadota         Armatimonadetes bacterium CG_4_10_14_3_um_filter_59_10

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;