RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA896973", tax_clade = "Sar" and tax_phylum = "Cercozoa"

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tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA896973 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8525943 8525943 PRJNA896973_P_NODE_20067_length_259_cov_1.811828_g19973_i0 PRJNA896973 20067 259 1.811828 4.69263452 Esquamula lacrimiformis 1176540 SAR_Eukaryotes SAR_Eukaryotes 113 1.07e-20   NTclustered gi|409971369|dbj|AB714271.1| 1176540 g19973 i0 89.13 19.7644787644788 92 8 36 2 164 255 3852 3763 Esquamula lacrimiformis gene for 28S ribosomal RNA, partial sequence blastn 5119 113 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida   Esquamula Esquamula lacrimiformis
20000051 20000051 PRJNA896973_S_NODE_2856_length_242_cov_3.076923_g2842_i0 PRJNA896973 2856 242 3.076923 7.44615366 Rosculus sp. 2231160 SAR_Eukaryotes SAR_Eukaryotes 270 5.53e-68   NTclustered gi|1402550473|gb|MH488759.1| 2231160 g2842 i0 91.089 7.24380165289256 202 14 82 4 21 219 1374 1174 Rosculus sp. isolate CSA small subunit ribosomal RNA gene and internal transcribed spacer 1, partial sequence blastn 1753 270 1 Eukaryota Sar   Cercozoa     Guttulinopsidae Rosculus Rosculus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;